Jit
Enthusiast computational biologist with business dream !!!
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Eugene V. Koonin Lab
Interested in understanding the evolution of life. To obtain glimpses of such understanding, we employ existing and new methods of computational biology to perform research in several major...SciLifeLab tutorial for bioinformatics analysis !
By Jit 2414 days agoscilifelab.github.io - SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-2014) Metagenomics Workshop 2015 November - Uppsala2016 November - Uppsala2017 November - Uppsala Introduction...CGView - Circular Genome Viewer
By Rahul Nayak 2350 days agowishart.biology.ualberta.ca - CGView is a Java package for generating high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a means of generating visual output suitable for the web. Feature...VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
By Abhimanyu Singh 2218 days agowww.ncbi.nlm.nih.gov - VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and...Genome Annotation using MAKER tutorial !
By Shruti Paniwala 2167 days agowww.biostars.org - MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite...Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High...
By Jit 2053 days agogithub.com - Darwin-WGA, is the first hardware accelerator for whole genome alignment and accelerates the gapped filtering stage. Darwin-WGA also employs GACT-X, a novel algorithm used in the extension stage to align arbitrarily long genome sequences using a...Genome in a Bottle (GIAB) Consortium
By Jit 1766 days ago Comments (3)jimb.stanford.edu - The Genome in a Bottle (GIAB) Consortium is a public-private-academic consortium hosted by NIST to develop the technical infrastructure (reference standards, reference methods, and reference data) to enable translation of whole human genome...SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs
By Neel 1436 days agogithub.com - The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short...OGDRAW - Draw Organelle Genome Maps
By Abhi 1147 days agochlorobox.mpimp-golm.mpg.de - OrganellarGenomeDRAW converts annotations in the GenBank or EMBL/ENA format into graphical maps. The input has to be a GenBank or EMBL/ENA flat file wherase the output can vary among several types of files....
