Jit
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regioneR: an R package for the management and comparison of genomic regions
By Jit 2643 days agogattaca.imppc.org - Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of GenomicRanges and a powerful and customizable permutation test framework....PheWAS: R package is designed to provide an accessible interface to the phenome wide association...
By BioStar 2046 days agogithub.com - The PheWAS R package is designed to provide an accessible interface to the phenome wide association study. For a description of the methods available and some simple examples, please see the package vignette or the R documentation. For...WEGO : simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation...
By BioStar 2155 days agowego.genomics.org.cn - WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many...Pacman
By Rahul Nayak 4037 days agoThe pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions.clusterProfiler
By Jit 3551 days agowww.bioconductor.org - statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author:...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 2812 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesplumber:An R package that converts your existing R code to a web API
By BioJoker 2551 days agohttps://www.rplumber.io/ - plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input #* @param msg The message to echo #* @get /echo function(msg=""){...Shinyheatmap
By Jit 3424 days agohttp://shinyheatmap.com/ - Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in...Boku Chair of Bioinformatics
The Bioinformatics group at Boku University has two main areas of interest, underpinning a common goal, the study of complex systems in living organisms. To overcome the engineered redundancies and combinatorial effects prevalent in higher...List of gene ontology software and tools
By Jit 4381 days ago Comments (9)The list of most commonly used old and new GO term enrichment determination tools
