Jit
Enthusiast computational biologist with business dream !!!
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Calling variants in non-diploid systems
By Neel 1947 days ago Comments (1)training.galaxyproject.org - The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS platforms) and true low frequency variants. Some of the early attempts to do this well have been...GenomeTools: The versatile open source genome analysis software
By Neel 1726 days agohttp://genometools.org/ - The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named...Refseq viraal genome sequences !
By Jit 1779 days agoftp.ncbi.nlm.nih.gov - List of all viruses on NCBI https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/CrossMap: program for genome coordinates conversion between different assemblies
By Rahul Nayak 1733 days ago Comments (1)crossmap.sourceforge.net - CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats...The complete sequence of a human genome
By Neel 1668 days agowww.science.org - The completed regions include all centromeric satellite arrays, recent segmental duplications, and the short arms of all five acrocentric chromosomes, unlocking these complex regions of the genome to variational and functional studies.
Bioinformatics tools for genome assembly !
Last updated 1189 days ago by BioStarThere are numerous genome assembly tools available, each with its strengths and weaknesses. Here is a list of some widely used genome assembly tools as of my last update in September 2021: SPAdes: An assembler specifically designed for...The Day We Began Reading the DNA of the World
By Jitendra Narayan 50 days agoImagine waking up one day and realizing that somewhere in a laboratory, a scientist is reading the DNA of a whale. Somewhere else, another team is sequencing a rare plant, while researchers in India are decoding the genomes of diverse human...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4848 days ago320000 viruses in mammals yet to sequenced in future!!!
By Rahul Agarwal 4800 days ago70 per cent of emerging viral diseases such as HIV/AIDS, West Nile, Ebola, SARS, and influenza, are zoonoses - infections of animals that cross into humans.Tools to detect synteny blocks regions among multiple genomes
By Jitendra Narayan 4787 days ago Comments (24)Collections of synteny detection tools and related materials
