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Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
By Jit 1349 days agoprakharg24.github.io - We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have...DNA Transcription (Advanced)
By Jitendra Narayan 3587 days agoTranscription is the process by which the information in DNA is copied into messenger RNA (mRNA) for protein production. Originally created for DNA Interactive ( http://www.dnai.org ). TRANSCRIPT: The Central Dogma of Molecular Biology: "DNA makes...FSA: Fast Statistical Alignment
By Jit 2848 days agofsa.sourceforge.net - FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a...Tetra-Nucleotide Analysis
By Jit 2761 days agochunlab.wordpress.com - A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though...ACANA: An accurate and consistent alignment tool for DNA sequences
By Jit 2545 days agowww.niehs.nih.gov - ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It attempts...RopeBWT2: Incremental construction of FM-index for DNA sequences
By Rahul Nayak 2222 days agogithub.com - RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally inserting one or multiple sequences into an existing pseudo-BWT position by position, starting from the end of the sequences. This...DeepVariant : an analysis pipeline that uses a deep neural network to call genetic variants from...
By Jit 1765 days agogithub.com - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation...ENCODE3: A collection of research articles and related content describing the Encyclopedia of DNA...
By Shruti Paniwala 1569 days agoENCODE 3 A collection of research articles and related content describing the Encyclopedia of DNA Elements, its datasets and tools.Metabuli 분리 improves metagenomic read classification
By Abhi 539 days agogithub.com - Metabuli 분리 improves metagenomic read classification through metamers, DNA-AA k-mers, to be sensitive and specific, recovering 99% and 98% of DNA or AA classifiers. Metabuli is metagenomic classifier that jointly analyze both DNA and amino...List of motif discovery tools !
By Neel 2196 days ago Comments (2)A DNA sequence motif represented as a sequence logo for the LexA-binding motif. I
