Jit
Enthusiast computational biologist with business dream !!!
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QuasiModo - Quasispecies Metric Determination on Omics
By Neel 1245 days agogithub.com - This repository contains the scripts and pipeline that reproduces the results of the HCMV benchmarking study. In this study we evaluated genome assemblers and variant callers on 10 in vitro generated, mixed strain HCMV sequence samples, each...OGDRAW - Draw Organelle Genome Maps
By Abhi 1145 days agochlorobox.mpimp-golm.mpg.de - OrganellarGenomeDRAW converts annotations in the GenBank or EMBL/ENA format into graphical maps. The input has to be a GenBank or EMBL/ENA flat file wherase the output can vary among several types of files....UniqueKmer: Generate unique KMERs for every contig in a FASTA file
By Abhi 1072 days agogithub.com - Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. ATCGATCCTTAAGG) that are only presented in one contig, but not presented in any other contigs (for both forward and reverse strands). This tool...Comparative Genomics Workshops !
By Rahul Nayak 1032 days agowww.genome.gov - This meeting's objective was to obtain a big picture look at the current state of the field of comparative genomics with a focus on commonalities across genomic investigations into humans, model organisms (both traditional and...Environmental Genomics Group SciLifeLab/KTH Stockholm
By BioStar 723 days agohttps://github.com/envgen - Useful Metagenomics resourcesNCBI Datasets pages
By BioStar 500 days agoAssembly and Genome record pages now redirect to new NCBI Datasets pages.Entire Human Genome Sequencing !
By LEGE 235 days agoCost-effective whole human genome sequencing has revolutionized the landscape of genetic research and personalized medicine by making comprehensive genetic analysis accessible to a wider population. Through advancements in sequencing technologies,...npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
By Jit 2741 days agogithub.com - npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It...WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
By Neel 1156 days agohuttenhower.sph.harvard.edu - Lateral gene transfer (LGT) is an important mechanism for genome diversification in microbial communities, including the human microbiome. While methods exist to identify LGTs from sequenced isolate genomes, identifying LGTs from community...ARC: pipeline which facilitates iterative, reference guided de novo assemblies
By Jit 2312 days agoibest.github.io - ARC is a pipeline which facilitates iterative, reference guided de novo assemblies with the intent of: Reducing time in analysis and increasing accuracy of results by only considering those reads which should assemble...
