Rahul Nayak
A Bioinformatician
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UPhO: Scripts for homology and orthology assessment from genomic sequences.
By BioStar 2140 days agogithub.com - UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies. Type UPhO.py -h for help. The only input requierement for UPhO...Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
By Rahul Nayak 1736 days agoMCBI have a curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism sources and current names. This set is critical for correctly identifying and classifying prokaryotic (bacteria and archaea) and fungal...IgBLAST 1.17 is now available with improved identification of productive V gene sequences
By Jit 1483 days agoIgBLAST 1.17 is now available with improved identification of productive V gene sequencesMACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
By Jit 2106 days agobioweb.supagro.inra.fr - MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multiple frameshifts and/or stop codons. MACSE is hence the first automatic solution to align protein-coding gene datasets containing...IMTECH Lab
Computer Aided Protein Structure Prediction; Identification of Vaccine Candidates (T-Epitope prediction); Analysis of Nucleotide/Protein Sequences; Development of Web Server/ Software; Creation of Public Domain Resources in Biology Present...You and your friend have similar DNA !!!
By Jit 3772 days agoYour friends may be as genetically similar to you as your fourth cousin ...AccNET
By Jitendra Narayan 2970 days agosourceforge.net - AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET...A5-miseq
By Jit 3020 days agosourceforge.net - _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_. Point to note: There are many situations where A5-miseq is not...Bioinformatics tools and software
By Jit 3063 days agodrive5.com - USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes....MEGAN6
By Neel 3044 days ago Comments (1)ab.inf.uni-tuebingen.de - Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools you need in one application. Taxonomic analysis using the NCBI taxonomy or a customized...
