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GenomeTools: The versatile open source genome analysis software
By Neel 1055 days agohttp://genometools.org/ - The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named...Calculate the significance of the difference between two trends
By BioStar 650 days ago Comments (1)To calculate the significance of the difference between two trends, you can use a statistical test such as a t-test or ANOVA (analysis of variance).Data Visualization in Bioinformatics: Useful and Eye-Catching Plots for Data Analysis
By LEGE 9 days agoThe choice of visualization can significantly impact the insights gained from bioinformatics data. By selecting plots tailored to your data type and analysis goals, you can effectively communicate your findings and make your research more impactful....GFinisher: a new strategy to refine and finish bacterial genome assemblies
By Jit 2342 days agogfinisher.sourceforge.net - GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references. java -Xms2G -Xmx4G -jar...mixtureS: a novel tool for bacterial strain reconstruction from reads
By BioStar 1585 days agowww.cs.ucf.edu - mixtureS that can de novo identify bacterial strains from shotgun reads of a clonal or metagenomic sample, without prior knowledge about the strains and their variations. Tested on 243 simulated datasets and 195 experimental datasets, mixtureS...Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
By Jit 881 days agowww.ncbi.nlm.nih.gov - LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus...gSearch: a fast and flexible general search tool for whole-genome sequencing
By Jit 2331 days agoml.ssu.ac.kr - gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a...Translational Bioinformatics: Transforming 300 Billion Points of Data
By Jitendra Narayan 4142 days agoTranslational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, Therapeutics, and New Insights into Disease Air date: Wednesday, June 20, 2012, 3:00:00 PM Time displayed is Eastern Time, Washington DC Local...ANGES: reconstructing ANcestral GEnomeS maps
By Abhimanyu Singh 2776 days agopaleogenomics.irmacs.sfu.ca - This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated in August 2014) Examples...dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
By Jit 2559 days agowww.ncbi.nlm.nih.gov - While the number of sequenced diploid genomes have been steadily increasing in the last few years, assembly of highly polymorphic (HP) diploid genomes remains challenging. As a result, there is a shortage of tools for assembling HP genomes from the...
