Results for "raw"
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HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper...2297 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to...2186 days ago
- Read one or more FASTQ files, fastqe will compute quality stats for each file and print those stats as emoji... for some reason. Given a fastq file in Illumina 1.8+/Sanger format, calculate the mean (rounded) score for each position and print a corresponding emoji! https://fastqe.com/
2117 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
...herSC.py -par 20 destinedFolder mummerPath Sometimes, if the names of raw reads and contigs consists of...have a quick renaming of the names of contigs/reads in contigs.fasta or raw_reads.fasta using the followi...2103 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and t...2043 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
....g. Albacore and Porechop), Deepbinner identifies barcodes from the raw signal (a.k.a. squiggle) whic... not use Deepbinner: You only have basecalled reads not the raw fast5 files (which Deepbinner...2004 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)1984 days ago
wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and t...1935 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...r a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PB / ONT reads as input and o...1878 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...r a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PB / ONT reads as input and o...1783 days ago
