Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele...2129 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
STRUM is a method for predicting the fold stability chang...ty of features at different levels of sequence and structure properties. The unique charac...mbination of sequence profiles with low-resolution structure models from protein structure...2128 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data....sualisation of mapped regions against an annotated genome. Flexible quantitation of th...interest Creation of reports containing data and genome an...2127 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User In...es like feature counts. Supported types of experiments include: Whole-genome se...2127 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package....It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved over time...thus funannotate is aimed at simplifying the genome su...2119 days ago
2111 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supp...2110 days ago
2110 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated...nces are used to predict gene structures via spliced alignments. GenomeThreader was motivated by di...2105 days ago
2104 days ago