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2765 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies....ython support for the BioSQL database schemalibbtlib-perl - library for basic sequence...3994 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to anal...abbit hole and possibly never getting a solution. Learn to perform root cause analysis, learn enough about the under...3994 days ago
3960 days ago
Rdatamining.com : R and Data Mining
This website presents examples, documents and resources on data mining with R. Documen...for Data Mining, R and Data Mining: Examples and Case Studies and Time Series Analysis and Mining with R.3959 days ago
3954 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3912 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the...ised MinION™ device. These are a new generation of electronic molecular analysis system for use in scientific...3857 days ago
3964 days ago
Bio++ : C Language libraries for your biological need
...for Bioinformatics, including sequence analysis,phylogenetics, molecular evol...f the libraries are as follows:Sequence analysis Sequence and Site objects, w...u B. Non-homogeneous models of sequence evolution in the Bio++ suite...of C++ libraries for sequence analysis, phylogenetics, molecular evo...3991 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an i...3991 days ago
3991 days ago
3991 days ago
100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. Food and Dr...ounced that it has added 20 newly completed genome sequences of foodborne disease-causing...hnology Information. 100K Genome Project, aims to sequence...3967 days ago
Prime Minister’s 100k Genome Project
Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England. A landmark project by british government. Genomics England will play...3967 days ago
Structural polymorphism analysis from NGS data
...analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagship...will be critical to establish a link between sequence variation, functional variati...tational facilities and expertise in NGS data analysis, and will benefit as well fro...3992 days ago
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3992 days ago
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will b...ga. Alignment to hona hi tha. Mera sequence mera base. Markov aapke hai...mil gaya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hon...GeneScan Karke Dekho Alignment Apna Sequence...3962 days ago
3952 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data A...will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from...3946 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1145 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->...2960 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a progr...basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3574 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3570 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the...ed genome, transcriptome, proteome, and metabolome analysis to reveal the molecular profi...it provides lots of useful tools for comprehensive analysis and comparison of high-throug...2406 days ago
3995 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of t...3951 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the analysis of genomic and transcriptomic...the many tools available for sequence translation. The choice of to...464 days ago
Comment on "Tools for RNA classification"
...eful for identifying non-coding RNA (ncRNA) sequences. Rfam: Rfam is a databa...tor machine (SVM) algorithm to classify RNA sequences. It is particularly useful f...a combination of HMM-based and comparative sequence analysis approaches to predict tRNA ge...464 days ago