List of gene ontology software and tools
...hways, disease and toxicity, and the effects of bioactive molecules. https://portal.genego.com/ GOEx (Stony Brook University) GOEx facilitates organism-specific studies by leveragin...3752 days ago
BGAgenomicsDB: Acaryochloris marina MBIC11017 - A cyanobacterial organim
...hey have application in industrial product, health application, food technology etc. One of the cyanobacterial organism is Acaryochloris marina MBIC11017. This organism has one circular chromosome a...3119 days ago
Next Generation Sequencing (NGS) Tutorials
...eq/ Bioinformatics and Seq courses: http://www.isb-sib.ch/training/training-activities-schedule/archive-2013.html Variant Detection (Model organism) Advanced tutorial https://do...3530 days ago
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Genome Assembly Tools and Software - PART2 !!
...nbsp;is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. scarpa 0.241 – Scaffo...2728 days ago
3990 days ago
Phylogenetic for Bioinformatics
...quence data suggests that all organisms on Earth are genetically rel...n represents the phylogeny of organisms, i. e., the history of organ...probable evolution of various organisms. Not until recent decades, h...lutionary connections between organisms are represented graphically...3989 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...utomation. The advent of Next Generation Sequencing (NGS) technology has brought in a new dimension to understand the molecular basis of a living organism. The Next Generation Sequenci...3888 days ago
Caulobacter ethensis - 2.0 : Computer-generated Genome of a Living Organism
All the genome sequences of organisms known throughout the world are stored in a d...t fully computer-generated genome of a living organism, developed by scientists at E...of a very large DNA molecule, a corresponding organism does not yet exist. ...1902 days ago
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Bioinformatics -- Understanding of living systems through information science
...ze life. One is example is the genome. In all organisms, DNA contains genetic inform...to investigate the principles of life. As an organism evolves, its genome sequence...ome is comparing it with the genomes of other organisms, to see where it's the same...3960 days ago
Memories Can Be Passed Down Through DNA
.../www.sciencemag.org/content/330/6004/611 "The cells in a multicellular organism have nominally identical DNA...tal and environmental cues (and alternative cell states in unicellular organisms), is the basis of epi-(above...3690 days ago
Parse a genbank file using regular expressions
...print "GI: $2\n"; } elsif (/(DEFINITION\s*)(.*)(\.)/) { print "Sequence name: $2\n"; } elsif (/(ORGANISM\s*)(.*)/) { print "Organism: $2\n"; } elsif(/(gen...2960 days ago
Next Generation Sequencing (NGS)
...ow, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic complexity of all the organism and also used to reveal genet...3950 days ago
Genetic Modified (GM) Food/Organisms
An organism that is generated through genetic engineering is considered to be a genetically modified organism (GMO). The first GMOs were ba...ature.com/scitable/topicpage/genetically-modified-organisms-gmos-transgenic-crops-and-73...3961 days ago
Caulobacter ethensis - 2.0 : Computer-generated Genome of a Living Organism
All the genome sequences of organisms known throughout the world are stored in a database belonging to the National Center for Biotechnology Information in the United States. As of today, the database has an additional entry: Caulobacter ethensis-2.0. It is the world's fi...Tags: Caulobacter, ethensis, Computer, generated, Genome, Living, Organism
1902 days ago
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
MCBI have a curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism sources and current names. This set is critical for correctly identifying and classifying prokaryotic (bacteria and archaea) and fungal samples. To provide easy access to these sequences, ...Tags: Curated, ribosomal, RNA, rRNA, reference, sequences, targeted, loci, verifiable, organism, 16S, 18S, 28S, ribosomal, RNA
1576 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...the final assembly? What do you think contamination would look like in the kmer plot? What can the kmer graph tell you about the ploidy of the organism?...1380 days ago
Comment on "Running Trinity on RNA-seq !"
...u will likely want to pursue to explore aspects of the biology of your organism based on your assembled trans...nctionally annotate the transcripts using Trinotate. If your organism has an assembled genome, cons...2166 days ago