Results for "species"
Blogs
...demo.ncsa.uiuc.edu/, which is a collaborative project designed to provide a visual means for simultaneously comparing genomes of multiple amniote species. The tool removes the burden...3980 days ago
Tools to detect synteny blocks regions among multiple genomes
...o synteny blocks from two related species (e.g., humans and mice) will...on chromosome of each of the two species) on several genomes. Figur...gous synteny blocks (HSB) amongst species. Some of them which were comm...lignments both within and between species. It is intended to help scien...2650 days ago
- +10 more Blogs
Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...ific sequencing technology, the models proposed in DAVI are generic and can be used across different NGS technologies as well as across different species https://iopscience.iop.org/a...1186 days ago
- ...program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequen...
2980 days ago
- +87 more Bookmarks
Files
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes.
...stor unless otherwise stated (macrochromosomal fusions not listed). The overall pattern of microchromosome stability and rearrangement across the species is illustrated Jarvis et al....2027 days ago
Evaluation of genome assembly software based on long reads
...evolution and sequence diversity. They have also been applied to resequencing analyses, to create detailed maps of structural variations in many species. Also, these new technologies...1960 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ndividuals viral genomes (also known as quasi-species). Genomix 0.2.11 – Par...otype-based Genome Assembler for Brassicaceae SpeciesKGBassembler (Brassicacea...mbly and Annotation of Transcriptomes for any SpeciesThe est2assembly pla...2726 days ago
Bioinformatics in Africa: Part5 - Nigeria
...level and proteomics studies on various species of malaria par...n comparative genome analysis of various species of Plasmodium ...1224 days ago
Top-level pages
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Eviden...olutionary relatedness among various groups of organisms (for example, species or populations), which is dis...3987 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ust, simple genotyping-by-sequencing (GBS) approach for high diversity species. Elshire et al., PLoS One 6(5...method for de novo SNP discovery and genotyping in model and non-model species. Peterson et al, PLoS One 7(5...3820 days ago
- +10 more Top-level pages
Wire posts
News
Barber pole worm , sheep pathogen sequenced !!!
Haemonchus contortus is a highly pathogenic parasitic nematode of that can infect a large number of wild and domesticated ruminant species and is the most economically important paras...3937 days ago
- ...enus Pandoravirus dwarfs other viruses, which range in size from about 50 nanometers up to 100 nanometers. A genus is a taxonomic ranking between species and family. Find more...
3931 days ago
- +9 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...te will be in charge of the detection of polymorphisms including structural variants, of the comparison of multiple and diverse genomes of a same species and of the construction of pa...3989 days ago
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
...t lab unit of the group using next generation sequencing technologies for a unique collection of tissues from representative mammals and outgroup species (e.g., birds). Topics of curr...3959 days ago
- +8 more Opportunity posts
ResearchLabs posts
- ...vides a quantitative framework for studying speciation, geographic variation and genome evolution; systematics, which acknowledges that the focal species of any study has relatives th...
3869 days ago
- ...nced and analyzed the genome of the invasive red fire ant Solenopsis invicta (PNAS 2011) 2. discovered that a fundamental social trait in this species (how many queens are accepted...
3599 days ago
- +11 more ResearchLabs posts
Video
Bioinformatics -- Understanding of living systems through information science
...occur. The genome comparison system developed by the Sakakibara Lab calculates homologous sequences called anchors, which are conserved between species. If the genome is considered...3957 days ago
- ..., with Michael Ashburner and Gerald Rubin, a bioinformatics initiative to unify the representation of gene and gene product attributes across all species, called Gene Ontology. He gra...
3913 days ago
- +2 more Video
Bio-Scripts
Perl script to run in parellel !
...finished run with parameters $chr_set!\n"; } sub touch { my ($fn, $seq) = @_; open FILE, ">$fn" or die $!; system ("augustus --species=caenorhabditis --outfile=$fn...1727 days ago
Pack a perl program with their dependencies on Ubuntu !
...horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where......1552 days ago
Groups
Comparative genomics is a field of biological research in which the genome sequences of different species — human, mouse, and a wide variety of other organisms from bacteria to chimpanzees — are compared. This group is dedicated to Comparative genomics ...2571 days ago
Tags
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ne content of two or more related species. Here are some general steps...ome synteny analysis: Choose the species: Select the species that you...genome sequences of the selected species from a public database, such...lutionary history of the compared species. Validate the results: Valid...464 days ago
- ...a early as possible). Suggestion: Do you have any closest species/organism/strain ? If so try t...lastn -query gene1.fa -out gene1.blast.txt -task megablast -db closest_species -evalue 1e-10 -best_hit_score...
2675 days ago
- +4 more Comments
