Tools to detect synteny blocks regions among multiple genomes
...ions are: SyntenyTracker ( http://www-app.igb.uiuc.edu/labs/lewin/donthu/Synteny_assign/html/), SyntenyTracker was shown to be an efficient and accurate automated tool for defining H...2609 days ago
List of gene ontology software and tools
...microarray hybridization experiments. The main function of GOEAST is to identify significantly enriched GO terms among give lists of genes using accurate statistical methods. http://...3708 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads&n...3223 days ago
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Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal...1919 days ago
Genome Assembly Tools and Software - PART2 !!
...MappingRMAP is aimed to map accurately reads from the next-generat...ficiently – and especially accurately. That is, without actually...ssemblerVGA is a method for accurate assembly of a heterogeneous v...o contigs. It is a very fast and accurate DNA sequence assembly softwar...2684 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...cz & Grabowski, Bioinformatics 27(6):860-2, 2011. PubMed Fast and accurate short read alignment with Bur...upp1):S52, 2011 PubMedCentral [requires a reference sequence] HiTEC: accurate error correction in high-thro...3778 days ago
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Human Genome Meeting 2014, Geneva, Switzerland
...ith the enormous challenges of assigning pathogenicity to each genomic variant, the functional analysis of the genome of each individual, and the accurate and detailed phenotypic chara...3879 days ago
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The Best Bioinformatics / Computational Biology Quotes
...nd protein. Warning! Your genome is full of garbage, delete it ! Bad or missing mouse genome. Spank the cat? (Y/N) Genome make very fast, very accurate mistakes. Let's BLAST it. S...3719 days ago
Drew Berry: Animations of unseeable biology
....com We have no ways to directly observe molecules and what they do -- Drew Berry wants to change that. At TEDxSydney he shows his scientifically accurate (and entertaining!) animation...3708 days ago
Pack a perl program with their dependencies on Ubuntu !
...ng readsBy BioStar 409 days ago Evaluationgenomeassemblysoftwarelongreads TGS technologies have been used to produce highly accurate de novo assemblies of hundred...1510 days ago
Tadpole is 250x faster than SPADes assembler !
...ith average coverage below this. trimends=0 (trim) Trim contig ends by this much. Trimming by K/2 may yield more accurate genome size estimation. cont...975 days ago
Comment on "URMAP, an ultra-fast read mapper"
...umber of CPU cores or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3x faster but somewhat less accurate. To get the full speed improv...1282 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate...ed as unmapped. This value can be lowered if the reads are known to be accurate. [80] --minimizer-window INT...2291 days ago