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2920 days ago
Computer simulation of genetic mechanism !!
...e Bayesian computation. https://sites.google.com/site/baysicsabc/ BEERS BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithms that aim to reconstruct diff...2969 days ago
Tools and Method for Haplotype phasing !
...ople.fas.harvard.edu/~junliu/plem/ “Read-backed phasing” algorithm: http://www.broadinstitute.org/gsa/wiki/index.php/Read-backed_phasing_algorithm SHAPE-IT: http://www.gr...1333 days ago
Bioinformatics Algorithm Demonstrations and Tutorials
...ons of selected computer science algorithms important in bioinforma...ng platform for demonstration of algorithms, since various steps of the...programming experience. The algorithms demonstrated include two app....org/downloads/bae/BioinformaticsAlgorithmsInExcel.zip One of the best...3699 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using com...2945 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...elopment of reliable knowledge –based potentials that can be used for automatic prediction of trans-membrane (TM) protein structure. While algorithm for identification of TM segm...3939 days ago
Bio++ : C Language libraries for your biological need
...sufficiently abstract and fluent to describe algorithms and interactions in a wide v...ic databases like GenBank, EMBL or SwissProt,Algorithms for plotting trees, with sup...imum likelihood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree recon...3942 days ago
Genome Assembly Tools and Software - PART2 !!
...pass 0.7.7 – A Cycle-Basis Algorithm for Accurate Haplotype Assemb...h 1.2.1 – Network Matching Algorithm to Gene AssemblyGeneStitch&nb...tome AssemblyIsoLasso is an algorithm to assemble transcripts and e...-ASM (Short Reads ASseMbly) algorithm is designed for DNA assembly...2680 days ago
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Artificial intelligence is more accurate than doctors in diagnosing breast cancer
...m Google Health and Imperial College London, designed and trained a computer model on X-ray images from nearly 29,000 women. The algorithm outperformed six radiolo...1580 days ago
3939 days ago
PostDocs positions in computer science in HELSINKI, FINLAND
...puter science and modelling, including Machine learning, Data mining, Algorithms, Computational Logic, Cloud...ves, and children's day care services. Positions are offered in: Algorithm engineering (String Algorithm...3888 days ago
Computational Structural Biology Lab IITKGP
...in interactions. Development of protein-protein, protein-RNA docking algorithm and prediction of binding sit...of RNA binding site in proteins. Study of miRNAs and development of algorithms for miRNA and traget predict...3225 days ago
1546 days ago
Bioinformatician become producer/director !!!
...s Koi Khel Nahi Jish Desh Mein Day Hoff Rehta Hai PDB Ek Numbari Structure Dus Numbari GCG Karo Sajana Naukar NCBI Ka 1942 -- A KEGG Story Algorithm Se Program Tak Haan Maine Bh...3913 days ago
Mathematics for Computing : Huffman Code (Tree Approach)
Determining a Huffman code for a discrete memoryless source, using the Huffman Tree algorithm3874 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-W...2900 days ago
Genetic Algorithms demonstration with word DNA in Perl
...d elements # originally written by Abigail # Documentation for the algorithm is at # http://theoryx5.uwin...ved => 1, parent => 0, fitness => 0 }; } } __DATA__ about algorithm and biology by century c...2366 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa --genome genome.fa --distanceLow distanceLow --...Tags: AlignGraph, algorithm, secondary, de novo, genome, assembly, guided, references
2204 days ago
HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so that a long read region can be aligned to at least one contig region, including its true genome region’s repeats i...Tags: HALC, algorithm, long, read, error, correction, NGS, PacBio, Nanopore
2152 days ago
Comment on "Tools for RNA classification"
...a comprehensive resource for RNA classification. RNAcode: RNAcode is a machine learning-based tool that uses a support vector machine (SVM) algorithm to classify RNA sequences. It...415 days ago
Comment on "URMAP, an ultra-fast read mapper"
...or threads to use for mapping. Default is the number of CPU cores or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3x faster but somew...1278 days ago