Five unique traits of effective computational biologist
...driven by large set of software, scripts, and tools to analyse gigantic biological d...etting a solution. Learn to perform root cause analysis, learn enough about the u...must also be excited about your research, the tools and technology you are using...3955 days ago
Five points for bioinformatics software/tools
...y spend time on computational analysis of huge amounts of data and t...cons of both kind of software/tools and try to assist (Hmmm not real...UI software for computational analysis? Should I use commercial bioi...e best part about open source tools/software is that they’re f...3712 days ago
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment...rformance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We f...1150 days ago
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour whi...ied QTL regions on SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs was pre...3794 days ago
3914 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and mini...rised MinION™ device. These are a new generation of electronic molecular anal...3817 days ago
Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10...pts-soul-searching.html http://assemblathon.org/post/44431915644/feedback-and-anal...3924 days ago
Bio++ : C Language libraries for your biological need
...luding non-homogenous models),Tools for manipulating Hidden Markov Models,Improved numerical tools (numerical derivatives, paramete...formatics, including sequence analysis,phylogenetics, molecular evol...of C++ libraries for sequence analysis, phylogenetics, molecular...3952 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an integrated environment in b...3952 days ago
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Structural polymorphism analysis from NGS data
...analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagship...vel of repetitiveness of complex genomes. The tools will be integrated into pipeline...tational facilities and expertise in NGS data analysis, and will benefit as well...3953 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this....e Tumhare Paas Hai Aao Database Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Me...3923 days ago
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Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Air date: Wednesday, February 0...h will soon outstrip advances in computing power to perform current methods of anal...3906 days ago
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU General Public License. # T...nated and ready for import into a spreadsheet program for browsing and further anal...2918 days ago
Perl script to run SATSUMA in loop !
...rict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...le = "renamedAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/satsuma-code-0"; # L...2144 days ago
Which of the following programming language is best for a bioinformatics beginner?
...arn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed...3535 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3531 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...em and by using bioinformatics tools this can be easily achieved.&nbs...tome, proteome, and metabolome analysis to reveal the molecular profi...is, it provides lots of useful tools for comprehensive analysis and comparison of high-th...y will be developing effective tools to eliminate manipulated dat...2366 days ago
3955 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comp...3911 days ago
Comment on "Tools for Sequence translation !"
...s is an important step in the analysis of genomic and transcriptomic data. There are several tools available for sequence translati...luding: ExPASy Translate Tool: This is a web-based tool that al...ication that provides several tools for sequence analysis, including sequence trans...425 days ago
Comment on "Tools for Differential expression analysis"
...Differential expression analysis is a widely used technique in...or groups. There are several tools available for performing differential expression analysis, including: DESeq2: This...d for differential expression analysis of RNA-Seq data. It uses a ge...425 days ago