Results for "Analysis tool"
Blogs
Five unique traits of effective computational biologist
...driven by large set of software, scripts, and tools to analyse gigantic biological d...etting a solution. Learn to perform root cause analysis, learn enough about the u...must also be excited about your research, the tools and technology you are using...3942 days ago
Five points for bioinformatics software/tools
...y spend time on computational analysis of huge amounts of data and t...cons of both kind of software/tools and try to assist (Hmmm not real...UI software for computational analysis? Should I use commercial bioi...e best part about open source tools/software is that they’re f...3699 days ago
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Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale g...ics datasets. But we need to understand the background of software/tool to better explain the data co...
3937 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment...rformance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We f...1138 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour whi...ied QTL regions on SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs was pre...3781 days ago
- Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis off course!!!
3902 days ago
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Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and mini...rised MinION™ device. These are a new generation of electronic molecular anal...3805 days ago
Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10...pts-soul-searching.html http://assemblathon.org/post/44431915644/feedback-and-anal...3912 days ago
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Pages
Bio++ : C Language libraries for your biological need
...luding non-homogenous models),Tools for manipulating Hidden Markov Models,Improved numerical tools (numerical derivatives, paramete...formatics, including sequence analysis,phylogenetics, molecular evol...of C++ libraries for sequence analysis, phylogenetics, molecular...3940 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an integrated environment in b...3939 days ago
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Top-level pages
- ...ng HT-NGS technologies, the main challenge is to cope with the analysis of vast production of sequencing database through advanced bioinformatics tools. In oder to develope sotware/tools bioinformatician/ biological...
3940 days ago
- ...of biological predictions and analysis" -- Jitendra Narayan "T...s of large data sets; (2) the analysis and interpretation of various...lopment and implementation of tools that enable efficient access and...rives knowledge from computer analysis of biological data. These can...
3939 days ago
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Wire posts
News
- PhylomeDB is a public database for complete collections of gene phylogenies (ph...gy and paralogy predictions which are based on the analysis of the phylogenetic trees. Th...aims at providing a high-quality phylogenetic anal...
3911 days ago
- In current era, we are handling huge amount of genomics data, and analysing it to make some biological sense out of it. Large-scale sequence studies requiring BLAST-based anal...
3882 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagship...vel of repetitiveness of complex genomes. The tools will be integrated into pipeline...tational facilities and expertise in NGS data analysis, and will benefit as well...3941 days ago
- ...ts of raw data that can be transformed into information by software and tools developed both in academia and i...requisite for this position. Experience with high throughput sequencing analysis methods, machine learning...
3941 days ago
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ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our long-term research objective is t...s, with an emphasis on mitosis. We develop in-vitro assays, quantitative image anal...
3941 days ago
- Melanie Bahlo is an applied statistician working in the areas of statistical genetics, bioinformatics and population...pedigrees Investigation of DNA sharing in distantly related individuals CNV anal...
3940 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this....e Tumhare Paas Hai Aao Database Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Me...3911 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3900 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Air date: Wednesday, February 0...h will soon outstrip advances in computing power to perform current methods of anal...3894 days ago
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Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU General Public License. # T...nated and ready for import into a spreadsheet program for browsing and further anal...2906 days ago
Perl script to run SATSUMA in loop !
...rict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...le = "renamedAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/satsuma-code-0"; # L...2132 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
...arn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed...3523 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3518 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...em and by using bioinformatics tools this can be easily achieved.&nbs...tome, proteome, and metabolome analysis to reveal the molecular profi...is, it provides lots of useful tools for comprehensive analysis and comparison of high-th...y will be developing effective tools to eliminate manipulated dat...2354 days ago
Groups
...icians and data miners for developing statistical software and data analysis. R's popularity has increased...of huge genomic data and biological packages. Bioconductor provides tools for the analysis and comprehension of high...3943 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comp...3899 days ago
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Tags
A powerful, yet simple, gene set analysis tool for interpreting RNA-seq and NGS results.
LifeMap Sciences is introducing GeneAnalytics, our new gene set analysis tool, which is applicable for NGS results and differentially expressed gene lists from variable sources. GeneAnalytics provides gene associations with tissues & cells, diseases, pathways, GO terms and compounds...Tags: Analysis tool, RNA sequencing, NGS, gene expression, functional analysis
3467 days ago
Comments
Comment on "Tools for Sequence translation !"
...s is an important step in the analysis of genomic and transcriptomic data. There are several tools available for sequence translati...luding: ExPASy Translate Tool: This is a web-based tool that al...ication that provides several tools for sequence analysis, including sequence trans...413 days ago
Comment on "Tools for Differential expression analysis"
...Differential expression analysis is a widely used technique in...or groups. There are several tools available for performing differential expression analysis, including: DESeq2: This...d for differential expression analysis of RNA-Seq data. It uses a ge...413 days ago
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