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Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS application note de...expression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor i...3207 days ago
Calling narrow and broad peaks from ChIP-Seq data
...w peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Roh...3207 days ago
Encode sequencing data freely available to download and use for academic means
...ty assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact wi...ing modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: htt...3715 days ago
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Awesome perl frameworks, libraries and software - PART 4
...efit of using the CloudFlare service. untoldwind/alfred2-layout - Alfred 2 Layout workflow nothingmuch/kiokudb - KiokuDB Core katzgrau/chip - A log file multiplexer...2504 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...h 21:2224-2241, 2011 Full Text Chromatin immunoprecipation analysis: ChIP-seq ChIP-seq: advantages and challenge...over-representation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq softw...3789 days ago
List of bioinformatics open source projects/software.
...http://www.geneprof.org/GeneProf/ A web-based, bioinformatics software suite for the analysis of functional genomics experiments, e.g. RNA-seq or ChIP-seq. GeneTalk http://www.ge...3766 days ago
High Density Sheep SNP Genotyping Chip released!!!
...uncing completion of the “Ovine Infinium® HD SNP BeadChip”, a high definition SNP chip for ship genome. The OvineSNP...titative trait loci, and comparative genetic studies. The BeadChip was developed in collaboratio...3906 days ago
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EMBO Practical Course, Bioinformatics, large-scale data, at Shenzhen, China
...ethods for genomic research. It will give insight into how biological knowledge can be generated from high-throughput sequencing (DNA-Seq, RNA-seq, ChIP-seq) experiments and will ill...3927 days ago
Post doc in Computational Genetics and Genomics at CEINGE Biotecnologie Avanzate, Naples, Italy
...will be part of a team of researchers with extensive expertise in genome cancer study. He/she will be involved in the analysis of DNA-seq, RNA-seq, ChIP-seq data using available meth...3746 days ago
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Comment on "Commercial and public next-gen-seq (NGS) software"
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract3557 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.htmlHere is my v...3632 days ago