Results for "Chip"
Users
Skills: ChIP-seq pipeline tools3519 days ago
- Brief description: genome annotation, transcriptome, RNA-seq, ChIP-seq, ChRIP, PARCLIP, cancer, noncoding, long-noncoding RNAS, epigenetics
1291 days ago
Blogs
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS application note de...expression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor i...3191 days ago
Calling narrow and broad peaks from ChIP-Seq data
...w peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Roh...3191 days ago
- +1 more Blogs
Bookmarks
Encode sequencing data freely available to download and use for academic means
...ty assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact wi...ing modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: htt...3699 days ago
- ...ity control of the raw reads, processing of the raw reads for the subsequent analysis and initial quality assessment of the library. ChIP Seq Protocol ChIP-Seq In this protocol we di...
3647 days ago
- +14 more Bookmarks
Pages
- ...ld , October 2002. Hitachi Soft develops low-cost human genome DNA chip By Kuriko Miyake, I...ters investors By Steve Mitchell, UPI , Nov. 2, 2002. Biochip sprouts DNA strands By K...
3915 days ago
Awesome perl frameworks, libraries and software - PART 4
...efit of using the CloudFlare service. untoldwind/alfred2-layout - Alfred 2 Layout workflow nothingmuch/kiokudb - KiokuDB Core katzgrau/chip - A log file multiplexer...2488 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...h 21:2224-2241, 2011 Full Text Chromatin immunoprecipation analysis: ChIP-seq ChIP-seq: advantages and challenge...over-representation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq softw...3773 days ago
List of bioinformatics open source projects/software.
...http://www.geneprof.org/GeneProf/ A web-based, bioinformatics software suite for the analysis of functional genomics experiments, e.g. RNA-seq or ChIP-seq. GeneTalk http://www.ge...3751 days ago
- +5 more Top-level pages
Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...uncing completion of the “Ovine Infinium® HD SNP BeadChip”, a high definition SNP chip for ship genome. The OvineSNP...titative trait loci, and comparative genetic studies. The BeadChip was developed in collaboratio...3891 days ago
- ...to $1000 prices, has now turned its attention to a consumer product - a chip that you can plug into your s...searchers are also working on finding the optimal technology for this on-chip DNA sequencing - be it electr...
3407 days ago
- +1 more News
Opportunity posts
EMBO Practical Course, Bioinformatics, large-scale data, at Shenzhen, China
...ethods for genomic research. It will give insight into how biological knowledge can be generated from high-throughput sequencing (DNA-Seq, RNA-seq, ChIP-seq) experiments and will ill...3911 days ago
Post doc in Computational Genetics and Genomics at CEINGE Biotecnologie Avanzate, Naples, Italy
...will be part of a team of researchers with extensive expertise in genome cancer study. He/she will be involved in the analysis of DNA-seq, RNA-seq, ChIP-seq data using available meth...3730 days ago
- +7 more Opportunity posts
ResearchLabs posts
- ...ironment interactions by automated phenotyping, using image analysis, machine learning, sparse model building and causal inference. DNA-, RNA- and ChIP-Seq and their applications to...
3884 days ago
- ...tools for the analysis of high dimensional data arising from "Multi-omics" applications. In particular, current activities involve the analysis of ChIP-seq and RNA-seq experiments....
2957 days ago
- +1 more ResearchLabs posts
Tags
Comments
Comment on "Commercial and public next-gen-seq (NGS) software"
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract3542 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.htmlHere is my v...3617 days ago
- +3 more Comments
