Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, J-Circos
2626 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idiogram drawing as well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists....Tags: DRAWID, user-friendly, Java, software, chromosome, measurements, idiogram, drawing
2343 days ago
What are the difference between 3C, 4C and Hi-C methods ?
3C: chromosome conformation capture 4C:chromosome conformation capture-on-chip 5C : chromosome conformation capture carbon copyTags: 3C, 4C, Hi-C, chromosome, conformation, capture
2043 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: conda install -c bioconda -c conda-forge chromosight or, if you want to get the latest development version: pip3 in...Tags: chromosight, Computer, vision, program, pattern, recognition, chromosome, Hi-C, contact, maps
1496 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify the o...Tags: Integrative, reconstruction, cancer, genome, karyotypes, chromosome
1088 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in its genomic context in parallel...Tags: Genomicus, genome, browser, enables, navigate, genomes, several, dimensions, chromosome, evolution, ancestral, genome
788 days ago
Chromosome breakpoint - a breakup to remember
Chromosome breakpoint refers to the physical location where a chromosome is broken and rearranged. Chromosome breakage can occur spontaneously or be induced by environmental factors such as radiation, chemicals, or viruses. The rearrangement of genetic material resulting from ...Tags: chromosome, breakpoint, evolution
417 days ago