Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend tim...ros and cons of both kind of software/tools and try to assist (Hmmm not...tics. The best part about open source tools/software is that they’...is entirely wrong. Using proprietary tools does not absolve you of the...3725 days ago
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment an...rformance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We f...1163 days ago
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which...ied QTL regions on SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs was pre...3807 days ago
Statistics Using R with Biological Examples
This book is a manifestation of my desire to teach researchers...e covers and to introduce the utilization of R as a tool for analyzing their data. My...te the great potential statistics has to offer as a tool to answer biological question...2547 days ago
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Virtual Bioinformatics Online Tutorial
...and STADEN Tutorials Oxford Univ , UK BIOTOOLS96 (Univ of) Nottingham , UK,...Virtual School of Natural Sciences Sequence comparisonUniversite de) Rouen , F...of Tampere Tutorials using NCBI Bioinformtics Tools3938 days ago
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BEReX : Biomedical Entity-Relation eXplorer
BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX integrates eight popular dat...3857 days ago
Update Genome Workbench 2.7.15 released
NCBI Genome Workbench is an integrated applicati...me Workbench is built on the NCBI C++ ToolKit and uses cross-platform AP...at NCBI and makes use of the NCBI C++ ToolKit. The C++ ToolKit provides...of plain GI numbers Mac OS: improved tooltips for toolbar buttons Phyl...3738 days ago
Structural polymorphism analysis from NGS data
...f the detection of polymorphisms including structural variants, of the comparison of multiple and diverse genom...accommodating the high level of repetitiveness of complex genomes. The tools will be integrated into pipe...3966 days ago
"Advances in Molecular Dynamics of Biomolecules" December 3-4, 2013 @ JNU
The extensive growth of computational power and resources over the last two decades has l...e molecular level. Molecular Dynamics (MD) simulations have been an invaluable tool in elucidating the structural...3894 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this......e Tumhare Paas Hai Aao Database Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Me...3936 days ago
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Bioinformatics -- Understanding of living systems through information science
...computers and techniques from information science are not just used as tools to advance life science research;...h as inversions, transpositions, and duplications, occur. The genome comparison system developed by the...3934 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://..._file=commandArgs(TRUE)[3] library(genoPlotR) #Read fastANI output comp...1118 days ago
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Tryst with a Bioinformatician # Dr Altan Kara
...cal problem and by using bioinformatics tools this can be easily achieved. ...package is, it provides lots of useful tools for comprehensive analysis and comparison of high-throughput expe...cs company will be developing effective tools to eliminate manipulated dat...2379 days ago
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Comment on "Sibelia: A comparative genomics tool"
...prove coverage. References ========== 1. Ilya Minkin, Nikolay Vyahhi, Son Pham. "SyntenyFinder: A Synteny Blocks Generation and Genome Comparison Tool" (poster), WABI 2012 http://...1302 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...possible to speed up the computations by over two times in comparison with SatsumaSynteny2, another popular tool. Such high efficiency was att...-blocks-animals.html https://github.com/ComparativeGenomicsToolkit/hal/tree/master/synteny1428 days ago