Results for "DB"
Users
Skills: DBMS2472 days ago
2152 days ago
Blogs
Tools to detect synteny blocks regions among multiple genomes
...s) A new tool for mining syntenic blocks in comparative genomics SynMap (http://genomevolution.org/wiki/index.php/SynMap), SyMAP (http://www.symapdb.org/) SyMAP (Synteny Mapping...2614 days ago
List of gene ontology software and tools
...etric distribution analysis to determine if any statistically significant gene ontology co-clustering has occurred. http://pathcuric1.swmed.edu/pathdb/classifi.html EasyGO (China...3713 days ago
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Bookmarks
BINC (BioInformatics National Certification) Website address
...s National Certification) is an initiative of Department of Biotechnology(DBT), Government Of India in coo...t a prerequisite.Note that the foreign students will only be certified by DBT and are not eligible for the...3920 days ago
Next Generation Sequencing (NGS) Tutorials
...whole-exome data http://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annotation pipeline: a...anism) Advanced tutorial https://docs.google.com/document/pub?id=1CuKkKylVDb03tnN7RSWl5EUzleetn0ctjmvaidPK...3491 days ago
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Files
Evaluation of genome assembly software based on long reads
...UAST software. The 11 software that have been evaluated are: Celera Assembler , Falcon , Miniasm, Newbler , SGA Assembler, Smartdenovo, Abruijn, Ra, DBG2OLC, Spades and Cerulean. Th...1923 days ago
Biotechnology Eligibility Test (BET) Question Paper !
DBT-BET JRF 2019 Exam was held suc...Paper & Answer key of DBT-BET 2019 Exam has been released. The best part about the DBT-BET Exam is both the questio...o check how well you did in the DBT-BET exam, how much you are g...owship should take up the DBT-BET Exam, DBT – Biotec...1849 days ago
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Discussion topics
Want to Know which genome assembler rule the world ?
...1/10/abstract http://blogs.nature.com/news/2013/07/genome-assembly-contest-prompts-soul-searching.html http://assemblathon.org/post/44431915644/feedback-and-analysis-of-the-assemb...3923 days ago
Pages
- ...learning.com/blog/ruby-programming-challenge-faq/ Common "issues" faced by Ruby Newbies by Chris Strom -http://japhr.blogspot.com/2009/10/newbie-feedback.html Bookshttp://www.sapp...
3951 days ago
BioRuby :Ruby packages for biologist
...other languages because of Ruby's extremely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM...3951 days ago
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Top-level pages
- ...informatics). Organism specific databases have been developed (such as ACEDB, the A C. Elegans DataBase fo...logical research. However, membrane proteins are underrepresented in the PDB structure database. Since mem...
3951 days ago
- ...arch group. Our research focuses on image informatics and scalable querying and mining of graphs.For more detail visit: http://www.cs.ucsb.edu/~dbl/ Here are the materials (Le...
3950 days ago
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Wire posts
News
- PhylomeDB is a public database for complete collections...and multiple sequence alignments. Moreover, phylomeDB provides genome-wide ortholog...ent trimming and evolutionary model testing. PhylomeDB includes also a public downlo...
3922 days ago
100K Foodborne Pathogen Genome Project
...Center for Food Safety and Applied Nutrition, and Agilent Technologies, today announced that it has added 20 newly completed genome sequences of foodborne disease-causing microorga...3926 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...benefit as well from national and international collaborative networks (Aplibio http://www.renabi.fr/platforms/aplibio/, Transplant http://transplantdb.eu, AMAIZING http://www.amaiz...3952 days ago
- ...osition of Junior Research Fellow (JRF) in a Department of Biotechnology (DBT) sponsored research project...ciple Investigator) Advertisement: www.gbu.ac.in/Recruitment/JRF_Advt_DBTProject_Shakt
3952 days ago
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ResearchLabs posts
- DbBrowser: Attwood Lab research concerns p...the method of protein 'fingerprinting'. DbBrowser: Attwood Lab maintain...striking ways (e.g., Ambrosia, CINEMA); DbBrowser: Attwood Lab are build...re @ http://www.bioinf.manchester.ac.uk/dbbrowser/index.php
3855 days ago
- ...amilies Gene/Protein Networks Genome structure & base composition Highthroughput data analysis from NGS Lab Page http://gabi.cidbio.org/index/
3806 days ago
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Fun
Bioinformatician become producer/director !!!
...arah Hit Tera Ligand Chal Gaya Har Din Jo Modeling Karega Genbank Ke Us Paar Proteomics Koi Khel Nahi Jish Desh Mein Day Hoff Rehta Hai PDB Ek Numbari Structure Dus Numb...3922 days ago
What a bioinformatician always dream for ???
...irl :P A girl/boy with lesser E-values and higher compatibility score. Horoscope Match should be significant (not less that 18). Laptops with broadband connections. Licence to a...3848 days ago
Video
Genome + Epigenome = New Understanding of the Pathogens in Your Food
UC Davis's Bart Weimer describes foodborne pathogens and their proclivity for rapid genome rearrangement. The 100K Pathogen Genome Project he leads is using PacBio long-read sequenc...3876 days ago
If your genes revealed you would get a disease, would you want to know?
A massive, groundbreaking new study underway at Kaiser Permanente and the University of California San Francisco may shed light one day on the genetic roots of diseases such...3843 days ago
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Bio-Scripts
Retrieve NCBI GenBank records with a range of accession numbers
...rch { my %param = @_; my $esearch = "$param{url}/esearch.fcgi?db=$param{database}" ....rettype=$param{returnType}&retmode=text&retstart=$retstart&retmax=$retmax&db=$param{database}&query_key=$q...2919 days ago
Blast script to index and extract sequence !!
...CACAGACAGATAAAAATTACAGAGTAC # generate the blast database $ makeblastdb -dbtype nucl -out EC -in EC4115.f...ACAGAC .... # query the blast database by id and coordinates $ blastdbcmd -db EC -range 100-105 -ent...2855 days ago
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Polls
Do you think it's important for everyone to pass BINC exam?
The Department of Biotechnology (DBT), Government of India has instituted BINC examination with the objective of evaluating the Bioinformatics knowledge & skills of students. Do you think it is important ?2920 days ago
Groups
...ser Biological Software Developement DARSAN PhyloStruct BioScope BioJotter BioTune Biological Database Developement MigraineDB AntioxDB Molecular Modelling and...3947 days ago
BioInformatics National Certification (BINC)
...s National Certification) is an initiative of Department of Biotechnology(DBT), Government Of India in coo...nts, training period and method of training. Department of Biotechnology (DBT), Government of India, has i...3926 days ago
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Tags
- This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To get started, select a histone typ...
Tags: Bioinformatics, Histone, Database, DB, NCBI
2897 days ago
Comments
Comment on "Download desire version of Blast software !"
Blast database version 4 @ https://ftp.ncbi.nlm.nih.gov/blast/db/v4/946 days ago
Comment on "Command line to create blast uniref database !"
wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz gunzip -v uniref90.fasta.gz makeblastdb -in uniref90.fasta -dbtype prot -input_type fasta -out uniref90.fasta949 days ago
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