Results for "Deep Sequencing"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install sever...pers: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglibbiojava-java - Java API to...3949 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological dat...clues and solutions, and learn to take a long distance view of an issue before deep divin...3949 days ago
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Bookmarks
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3901 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling...onstrate that while existing tools are based on data generated from a specific sequencing technology, the models propos...1145 days ago
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Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer amo...
3560 days ago
- Genome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.
3430 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...3951 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3944 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...reads as obtained from ultra-deep sequencing of a mixed sample. The packag...ling and scaffolding Illumina sequencing data of microbial communities...nd reads from high throughput sequencing platforms, e.g. Illumina and...ng errors in experiments with deep coverage (e.g. >15X), specifical...2685 days ago
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a perl filter to colorize and simplify (or expand) gcc diagnostic me...-TinyCompiler - Perl bindings for the Tiny C Compiler robkinyon/dbm-deep - DBM::Deep Perl...2493 days ago
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Top-level pages
- The completion of the first human genome...s was just a start of the modern DNA sequencing era which resulted in further...ed strategies of high-throughput DNA sequencing, so called the “high-th...quo; (HT-NGS). The decreasing genome sequencing cost and desire to explore an...
3947 days ago
- "Bioinformatics is a science of biologica...ioinformatics component. The goal of sequencing projects, for example, is not...sequence data: The primary data of sequencing projects are DNA sequences. T...85–219The Genome International Sequencing Consortium (2001) Initial seq...
3946 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of the ancient DNA recor...
3811 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
...owing the success of the last three years' UK Next Gen Sequencing meetings at Nottingham,...ate of all aspects and applications of Next Generation Sequencing. More at >> http://www.nottingham.ac.uk/deepseq/events.aspx3918 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 la...y Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the c...3948 days ago
- van Noort Group is looking for PhD fellows We curren...underlies this project consists of high-throughput sequencing of DNA and mRNA of population...for this position. Experience with high throughput sequencing analysis methods, machine lea...
3948 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as...ethods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational com...
3947 days ago
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
The Human Genome Project led to the development of a wide array of technologies to...e, chemicals and other substances. The genomics platform uses cancer genome sequencing and other high-throughput tec...3918 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data...l graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biologi...3901 days ago
Computer Theory & Genetics: George Chao at TEDxUMNSalon
George Chao is an undergraduate senior studying Genetics and Computer Science at the University of Minnesota. Hav...experience. At a TEDx event, TEDTalks video and live speakers combine to spark deep discu...3914 days ago
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Bio-Scripts
- ...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. adapte...Collect whole genome sequencing-related metrics. Colle...ed allele fractions in pooled sequencing CalculateGenotypePosteri...
2074 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ form...p is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1558 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high d...xplosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques....3415 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3196 days ago
Groups
Python is a programming language that lets you work more quickly and integrate your.... Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3945 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic comple...3906 days ago
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Tags
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to animal and microbial systems] Sense from sequence reads: methods for alignment and assembly. Flicek & Birney, Nat Methods...Tags: Bioinformatics, Genomics, NGS, Deep Sequencing
3778 days ago
- Illumina, Inc. announced Tuesday that its new HiSeq X Ten Sequencing System has broken the “sound barrier” of human genomics by enabling the $1,000 genome. “This platform includes dramatic technology breakthroughs that enable researchers to undertake studies of unprecedented sca...
Tags: Bioinformatics, Genomics, NGS, Deep Sequencing
3761 days ago
Comments
- ...The Python script htseq-qa takes a file with sequencing reads (either raw or al...cross-platform quality analysis pipeline for deep sequencing data. NGS QC Toolkit NG...nbsp;a quality control tool designed for DNA sequencing data for raw data, alignment,...
2136 days ago
