Results for "Gene Expression Analysis"
Users
Interests: Gene Expression Analysis3738 days ago
Blogs
Five unique traits of effective computational biologist
...l programmer learn Perl's regular expression when they started a pro...plain their one graph (which they generally produce after one year o...problems into search engines that generate no results, and every question...tion. Learn to perform root cause analysis, learn enough about the under...3962 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data a...UI software for computational analysis?...to accomplice your biological analysis work. This means that if you...bioinformatician this is not generally well encouraged approach in...3719 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3962 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3957 days ago
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Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just...e did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressi...3964 days ago
- Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis off course!!!
3922 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3956 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION&tr...system and miniaturised MinION™ device. These are a new generation of electronic molecular analysis system for use in scientific...3825 days ago
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Pages
Bio++ : C Language libraries for your biological need
...formatics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an extensi...inversion, etc.Random number generation: Quick & Dirty (32bits...of C++ libraries for sequence analysis, phylogenetics, molecular evo...3959 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and...ptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB)...3959 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the...alled the “high-throughput next generation sequencing” (HT-N...he main challenge is to cope with the analysis o...quences. The next step after reading genetic code is writing a script to an...
3959 days ago
- ...rives knowledge from computer analysis of biological data. These can c...the information stored in the genetic code, but also experimental resu...spatial organisation of their expression in the cell encoded by the DN...to provide raw data for later analysis. Once the raw data are availa...
3959 days ago
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Wire posts
News
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073952 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with f...to draw informative summary plots for analyses such as differential expression or clustering, where for each gene lis...3952 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...ing a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the context of a flag...uence variation, functional variation, gene/protein expression and phenotypic adaptation....l facilities and expertise in NGS data analysis, and will benefit as well fro...3960 days ago
- van Noort Group is looking for PhD fellows We currently access an unp...utational systems biology group is to generate biological sense from the...ited to better understand two complex genetic tr...ience with high throughput sequencing analysis methods, machine learning, pr...
3960 days ago
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ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our long..., with an emphasis on mitosis. We develop in-vitro assays, quantitative image analysis and cytosim, a computer simul...
3960 days ago
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3960 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, name...: Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...le jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka.... BLAST To Hona Hi Tha !! Meri Gene Tumha...aan Maine Bhi ClustalW Kiya Hai GeneScan...3930 days ago
- 1. A futuristic computational biology student was told to write "It is in my gene!!!" on the board 100 times as a pu...00; $count++) { print "It is in my gene!!!";}I guess, he is gonna to...bsp; $startGene=$1;&n...r asked the bartender:CREATE TABLE gene IF...
3713 days ago
Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Air...will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from...3914 days ago
Bioinformatics -- Understanding of living systems through information science
...n all organisms, DNA contains genetic information, and this is c...ly, it's been read using next-generation sequencers, and analyze...subtilis. Until now, genome analysis could only be done in nationa...r development has made genome analysis possible in an ordinary lab....3929 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org...len(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-reg...1148 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2929 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a...tware. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3542 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3538 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology...s profile. Alterations in the gene, tran...seful tools for comprehensive analysis and comparison of high-throug...red, what would you tell next generation bioinformaticians? Bio...2374 days ago
Groups
R is a free software programming language and a software env...ners for developing statistical software and data analysis. R's popularity has increased...cal packages. Bioconductor provides tools for the analysis and comprehension of high-thr...3963 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the...the genomic complexity of all the organism and also used to reveal genetic factors responsible for differ...3919 days ago
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Tags
Comments
Comment on "Tools for Differential expression analysis"
...Differential expression analysis is a widely used techniqu...e for performing differential expression analysis, including: DESeq2: This R...d for differential expression analysis of RNA-Seq data. It uses a generalized linear model to model the co...432 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a genome synteny analysis: Choose the species: Sel...nder or OrthoMCL. Orthologous genes are genes that are homologous and...435 days ago
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