Results for "GitHub"
Users
About me: ...n ResearchGate @ https://www.researchgate.net/profile/Jitendra_Narayan PubMed @ https://pubmed.ncbi.nlm.nih.gov/?term=Narayan+Jitendra Github @ https://github.com/jnarayan81 PhD thesis @...23 days ago
- Website: https://arupgsh.github.io/
1633 days ago
Blogs
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for working with big data pipelines in computer systems of diffe...1155 days ago
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software. Bioconductor &ndas...1155 days ago
- +29 more Blogs
Bookmarks
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...e reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg24.github.io/papers/401851.full.pdf1159 days ago
Janggu - Deep learning for Genomics
Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE cases https://github.com/wkopp/janggu_usecases1152 days ago
- +290 more Bookmarks
Files
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error:...
2164 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2699 days ago
Awesome perl frameworks, libraries and software - PART 2
...implementation briandfoy/git-github-creator - (Perl) Create a Github repository for your Perl modu...Russian perl6 book typester/github-ircbot-perl - ircbot to...dings for Thrust https://github.com/breach/thrust hotwolf/HS...2507 days ago
- +3 more Pages
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3792 days ago
List of bioinformatics open source projects/software.
...iopython.org/wiki/Main_Page Python language toolkit BioRails https://github.com/biorails a data manageme...uk/intact/ molecular interaction database InterMine http://intermine.github.io/intermine.org/ Extensive...3770 days ago
- +16 more Top-level pages
Wire posts
News
R package for visualising GO enrichment
...n or clustering, where for each gene list we display its behaviour in the experiment alongside with its GO annotations. Links @ http://raivokolde.github.io/GOsummaries/ Lab @ http:/...3953 days ago
- pybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs (https://github.com/arq5x/bedtools), which are widely used for genomic interval manipulation or "genome algebra"....
3559 days ago
- +13 more News
Opportunity posts
Postdoctoral positions are available at the Faryabi Lab
...n is a plus. More at University of Pennsylvania Pathology and Laboratory Medicine Robert B. Faryabi faryabiPenn@gmail.com http://faryabib.github.io/ How To Apply: email CV a...3142 days ago
- ...ence concepts and practices Skill in a combination of interpreted and compiled languages (e.g. Java, Python, C/C++, R, Ruby) Experience with Git/GitHub Experience with high perform...
2338 days ago
- +1 more Opportunity posts
ResearchLabs posts
- ...Simpson who is a Lecturer in Biological Informatics in the School of Informatics at Edinburgh University. Details to follow.... http://statbio.github.io...
2265 days ago
Genome Informatics Section Lab !
...postdoc and PhD students positions are available. More information and application instructions follow below. More at https://genomeinformatics.github.io/1575 days ago
- +1 more ResearchLabs posts
Bio-Scripts
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2277 days ago
Mapping with BWA-mem or BWA-sampe in one go with python script !
...eds to be aligned in paired read mode. BESST provides a script (https://github.com/ksahlin/BESST/blob/master...call to use BWA-sampe as the paired read alignment pipeline. https://github.com/ksahlin/BESST/blob/master...2137 days ago
- +29 more Bio-Scripts
Tags
- For a number of reasons researchers have been trying out GitLab as a replacement for for both GitHub and various continuous integration systems, and have been exploring configurations useful for model-fitting pipelines. Researchers turned one of these into an example...
Tags: GitHub, GitLab, drake, Rocker, R
1696 days ago
- +5 more Tags
Comments
- CheckM for Metagenome https://linsalrob.github.io/ComputationalGenomicsManual/CheckM/
649 days ago
Comment on "chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes"
More at https://lakshay-anand.github.io/chromoMap/index.html796 days ago
- +53 more Comments
