Results for "Mate pair sequencing"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install sever...pers: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglibbiojava-java - Java API to...3950 days ago
Computer simulation of genetic mechanism !!
...ate synthetic next-generation sequencing data by mimicking real sequencing process with empirical...Profile-based Illumina pair-end reads simulator https://code.go...enome or whole-exome next-gen sequencing data, with an emphasis on use...2975 days ago
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Bookmarks
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3901 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling...onstrate that while existing tools are based on data generated from a specific sequencing technology, the models propos...1146 days ago
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Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer amo...
3560 days ago
- Genome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.
3431 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...3951 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3944 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...o Genome AssemblerPRICE (Paired-Read Iterative Contig Extension)...ormation of paired-end and/or matepair data, SSPACE is able to assess...nd reads from high throughput sequencing platforms, e.g. Illumina and...clean sequence data from automated DNA sequencers prior to sequence a...2685 days ago
Bioinformatics in Africa: Part2 - Kenya
International Livestock Research Institute (ILRI): Under a NE...; Kingdom to provide access to courses and training mate...s of research interest: 1. EST clustering 2. Genome sequencing and annotation 3. Functional...1183 days ago
Top-level pages
- The completion of the first human genome...s was just a start of the modern DNA sequencing era which resulted in further...ed strategies of high-throughput DNA sequencing, so called the “high-th...quo; (HT-NGS). The decreasing genome sequencing cost and desire to explore an...
3947 days ago
- ...ences. Some completely automated annotation systems have been...f phylogenetic trees from the pairwise differences between sequences:...sting drug targets. It is estimated that membrane receptors form 50 %...h;219The Genome International Sequencing Consortium (2001) Initial seq...
3947 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of the ancient DNA recor...
3811 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science mee...ture state of all aspects and applications of Next Generation Sequencing. More at >> http:...3918 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Par...tific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the c...3948 days ago
- van Noort Group is looking for PhD fellows We curren...underlies this project consists of high-throughput sequencing of DNA and mRNA of population...for this position. Experience with high throughput sequencing analysis methods, machine lea...
3948 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as...ethods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational com...
3947 days ago
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
The Human Genome Project led to the development of a wide array of technologies to...e, chemicals and other substances. The genomics platform uses cancer genome sequencing and other high-throughput tec...3919 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data...l graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biologi...3902 days ago
- Air date: Wednesday, January 04, 2012, 3:00:00 PM Time displayed is Eastern Time, Was..., and to found anatomically distant metastases, ultimate...'s and BRCA1. Variations of this method enabled the sequencing phase of the Human Genome Pro...
3872 days ago
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Bio-Scripts
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PATH OF THE PERL EXECUTA...parameters,databases are are roughly 150k per base-pair of se...
2693 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fastq-dump...re 1-based coordinates --matepair-distance Filter by distance between matepairs....
2126 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high d...xplosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques....3416 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3197 days ago
Groups
Python is a programming language that lets you work more quickly and integrate your.... Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3945 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic comple...3907 days ago
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Tags
What is paired end and mate pair sequencing? How is it works?
I come across two confusing terms: paired end and mate pair sequencing. What are the difference betweeen them. How it is being done.Tags: Mate pair sequencing, Paired end sequencing, Sequencing, Genomics, NGS, Technology
3420 days ago
How does the 3D genome technology works?
There are many techniques available to enquire about the oganization of the nucleus. I am keenly interested to know the basic machanism behind it. I mean how does it works?Tags: Mate pair sequencing, Paired end sequencing, Sequencing, Genomics, NGS, Technology, Genome, 3D Genome
3272 days ago
