Results for "Paired end sequencing"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and...simple one module with no dependencies. Typically, Perl module...install argumentsResolving DependenciesTransaction Summary=====...k for Bundle::BioPerl dependencies and automatically resol...e to SamTools library for DNA sequencinglibbiojava-java - Java API to...3951 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of hu...confusing over open source, user friendly GUI, and commercial bioinfo...am sure your will enjoy it. I recommend your to swim freely in code&r...ome assembly and annotation. At the end, I wou...3709 days ago
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Bookmarks
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3903 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant callin...onstrate that while existing tools are based on data generated from a specific sequencing technology, the models propos...1148 days ago
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Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer amo...
3562 days ago
- Genome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.
3433 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I us...is best? or there might not be one specific language but a few that lend themselves best to Bio-informatics w...3953 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3946 days ago
Pages
Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with th...also protects you from disconnection, because the screen session doesn’t end when y...3705 days ago
Genome Assembly Tools and Software - PART2 !!
...(quality scores) and supports paired-end reads or bisulfite-treated reads...ph is a software that extends and joins contigs or scaffolds by r...o Genome AssemblerPRICE (Paired-Read Iterative Contig Extension)...nd reads from high throughput sequencing platforms, e.g. Illumina and...2687 days ago
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Top-level pages
- The completion of the first human genome...s was just a start of the modern DNA sequencing era which resulted in further...ed strategies of high-throughput DNA sequencing, so called the “high-th...quo; (HT-NGS). The decreasing genome sequencing cost and desire to explore an...
3949 days ago
- ...ce data: The primary data of sequencing projects are DNA seque...at have multiple functions depending on context (e.g., subcellar locat...enomics projects make an independent validation of the structures (by...h;219The Genome International Sequencing Consortium (2001) Initial seq...
3949 days ago
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Wire posts
News
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees sho...3952 days ago
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of the ancient DNA recor...
3813 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems...ormatician to analyze Next Generation Sequencing (NGS) data analysis. I...into pipelines and made available to end-users through the Galaxy plat...e development. Applicants should send a CV and the names of 2 referees wil...3950 days ago
- van Noort Group is looking for PhD fellows...project consists of high-throughput sequencing of DNA and mRNA of pop...ion. Experience with high throughput sequencing analysis methods, machine lea...as a minimum of two letters of recommendation. Starting date: from 1st of...
3950 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as...ethods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational com...
3949 days ago
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
The Human Genome Project led to the development of a wide array of technologies to...e, chemicals and other substances. The genomics platform uses cancer genome sequencing and other high-throughput tec...3921 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data...l graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biologi...3903 days ago
How DNA is Packaged (Advanced)
Each chromosome consists of one continuous thread-like molecule of DNA coiled tightly...ther and these then stack on top of each other. The end result is a fiber of packed n...dividing. At other times, as we can see here at the end of cel...3878 days ago
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Bio-Scripts
- # To follow these instructions, we'll assume your system admins have already installe....24.1/lib/perl5 make make install # Install dependencies for Ensembl API, VEP, O....1/bin:$PATH" # You can add those 2 lines to the end of you...
2146 days ago
Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos m...DNA,$currentPos,1); if($base eq "G"){ $countG++; } $currentPos++; } #end of whi...2918 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high...xplosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques....3418 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3199 days ago
Groups
Python is a programming language that lets you work more quickly and integrate you.... Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3947 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic comple...3909 days ago
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Tags
What is paired end and mate pair sequencing? How is it works?
I come across two confusing terms: paired end and mate pair sequencing. What are the difference betweeen them. How it is being done.Tags: Mate pair sequencing, Paired end sequencing, Sequencing, Genomics, NGS, Technology
3422 days ago
How does the 3D genome technology works?
There are many techniques available to enquire about the oganization of the nucleus. I am keenly interested to know the basic machanism behind it. I mean how does it works?Tags: Mate pair sequencing, Paired end sequencing, Sequencing, Genomics, NGS, Technology, Genome, 3D Genome
3274 days ago
Comments
Comment on "Short-read assembly using Spades !"
...nTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is a brie...e in FASTQ format, which contains the sequencing reads. If the reads are paired-end, they should be provided in s...mes of the input files containing the paired-end reads, and <output_dir> with t...422 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper...;] manta – Structural variant and indel caller for mapped sequencing data. [ paper-2015 ...1144 days ago
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