Results for "Plant"
Users
Interests: Plant molecular Biology3162 days ago
- Interests: Biological Control of Plant Diseases
2954 days ago
- +1 more Users
Blogs
List of Research Institutes in India (Biological Sciences/ Biotechnology)
...es, stress biology, ecophysiology, plant molecular physiology, filaria...atic, medicinal and other economic plants. Utkal UniversityVani Vihar...ement, Climate Science and Policy, Plant Biotechnology University of...nstitute of Medicinal and Aromatic PlantsLucknow 226 015, Uttar Prades...2356 days ago
Bioinformatics tools for telomere to telomere assembly !
...d by a database of exon annotations. (Kristoffer Sahlin @krsahlin)● LeafGo – workflow to rapidly produce high-quality de novo plant genomes (Luca Ermini @er...984 days ago
Bookmarks
- Plant scientists can exploit available 50 plant complete genomic data for their resequencing...evolution. Complete information about these plant genomes given in paper link..../www.crops.org/publications/tpg/articles/6/2/plantgenome2013.03.0001in
3841 days ago
- ...osomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating the synteny correspondences in Plant Genome Duplication Database....
2684 days ago
- +9 more Bookmarks
Files
Evaluation of genome assembly software based on long reads
...e been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling...1912 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3937 days ago
Pages
Bioinformatics in Africa: Part2 - Kenya
...;from various EST projects designed to gain insights into the insect ecology and plant pathogen interactio...1176 days ago
Bioinformatics in Africa: Part6 - Sudan
...p;information to serve as informatics and Digital library. Research Interest and Activities: 1. Plant Genetic Transformat...1176 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...xt generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text...on in Lotus japonicus. Urbański et al, Plant J 64:731-741, 2012. Publisher...is the basis for the screencast The iPlant Collaborative, an NSF-funded...3772 days ago
- ....html miRNA predictor : http://www.microrna.org/microrna/home.do Plant miRNA DB :http://bioinformatics.cau.edu.cn/PMRD/ miRBASE DB: http://www.mirbase.org/ Plant RNA predictor : http://plantg...
3488 days ago
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Wire posts
News
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
...25 Feb 10:30 PM Register here: http://www.strand-ngs.com/webinar_registration About Speaker: Dr. Veena Hedatale, has a PhD in Plant Genetics from The Radboud Uni...3363 days ago
- ...ers not only discovered the ancient human DNA but also microbial DNA reflecting the oral microbiome of the person who chewed the pitch, along with plant and animal DNA that could be...
1591 days ago
Opportunity posts
- ...and sequence analysis on Next Generation Sequencing (NGS) platform for plants as evident from publication(...to be sent: ngs@ihbt.res.in 2. Name of Position: Research Associate (Plant-Microbe Interaction). No....
3937 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
...e enabled a large number of genomic studies that impact human health and disease. Also, this has made possible the growth of microbial, animal and plant genomics studies. While the d...3915 days ago
- +72 more Opportunity posts
ResearchLabs posts
- ...terization of protein-protein interactions, peptide design, modeling of genetic variation, structure-based protein design and different aspects of Plant Bioinformatics. Take a look a...
3260 days ago
- ...uencing and bioinformatics with molecular biology and experimental procedures. Main research topics: - Comparative and Population Genomics of Plant Symbionts - Parasite Genome...
3259 days ago
- +3 more ResearchLabs posts
Video
Pimp your brain: Bioinformatics
Jan Lisec from the Max Planck Institute of Molecular Plant Physiology explains, in this "pimp your brain" e..."Pimp your brain" scientists from the Max Planck Institute of Molecular Plant Physiology describe their res...3538 days ago
Bio-Scripts
Download the genome from NCBI using bash script/command
...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_bacteria # -for plant curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary.txt' | awk '...2524 days ago
Download the gff files from NCBI using bash script/command
...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCA_.+)|\1\2/\2_genomic.gff.gz|' > genomic_file_bacteria # -for plant curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary.txt' | awk '...2515 days ago
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Tags
- Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available browsers: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome....
Tags: Genome Browser, Organism, Plant, Animal, Bacteria, fungi, Genome Sequence, DNA, Sequencing, Annotation, SNP, gff, gtf, gff3, vcf, bed
3907 days ago
- +12 more Tags
Comments
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...Genetics (2.397 :: 2.896) BMC Genomics (3.986 :: 4.360) BMC Plant Biology (3.813 :: 4.714)...: 8.867) OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2.362 :: 2.698) Plant and Cell Physiology (4.9...1097 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...Genetics (2.397 :: 2.896) BMC Genomics (3.986 :: 4.360) BMC Plant Biology (3.813 :: 4.714)...: 8.867) OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2.362 :: 2.698) Plant and Cell Physiology (4.9...1835 days ago
- +2 more Comments
