Results for "RNA Seq"
Users
Skills: RNA Seq1155 days ago
Blogs
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS application n...T-helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor infor...3212 days ago
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of miRNA – mRNA...3212 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...etic variations using the HugeSeq pipeline DOI: 10.1038/n...ttp://bioinformatics.oxfordjournals.org/cgi/content/abstract/28...t analysis of next-generation sequencing data. http://www....se-schedule/ngsmetagenomics/ RNASeq:http://www.nbic.nl/educati...3502 days ago
RNA Sequencing Helps Identify Functional Variants from GWAS
...lenge nowadays is figuring out how the identified loci relate to disease. As reported last month in Nature and its associated journals, advances in high-throughput RNA sequencing are providing new tool...3831 days ago
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Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are...out new therapeutic target. One way is to look the relationships between mRNA, methylation and miRNA...
3576 days ago
- Explain the DNA and RNA with picture ...
1208 days ago
Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and m...The platform technology uses nanopores to analyse single molecules including DNA/RNA...3828 days ago
Pages
Bio++ : C Language libraries for your biological need
...aries for Bioinformatics, including sequence analysis,phylogenetics,...res of the libraries are as follows:Sequence analysis Sequence and S...with various Alphabet support (DNA, RNA, Proteins, Codons, any 'Word'...oussau B. Non-homogeneous models of sequence evolution in the Bio++ s...3962 days ago
Genome Assembly Tools and Software - PART2 !!
...LASSO Regression Approach to RNA-Seq Based Transcriptome AssemblyI...sh; DNA Assembly of the Short Sequences coming from 454 sequenc...ned to heuristically assemble RNA-seq reads in the absence of a...rowse interface driven by the Seqfeature database. It accepts b...2700 days ago
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Top-level pages
- ...tein interactions. Analysing sequence data: The primary data...classification with 70S, 30S RNAs established the separate kin...The SWISS–PROT protein sequence database and its supplem...2:185–219The Genome International Sequencing Consortium (...
3962 days ago
Phylogenetic for Bioinformatics
...orphological, biochemical, and gene sequence data suggests that all o...Every living organism contains DNA, RNA, and proteins. Closely relate...ich is discovered through molecular sequencing data and morphological...bsp;http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTORIAL/...3961 days ago
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Wire posts
News
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gen...w includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Ana...l analysis using one of the major RNA-Seq analysis tools, DEseq/DEseq2,...torial. Although we focus on RNA-Seq data here, but pathway analys...3848 days ago
Deadly Human Pathogen Cryptococcus Sequenced
"Now, researchers have sequenced the entire genome and all the RNA products of the most important pathogenic l...04/deadly-human-pathogen-cryptococcus-fully-sequenced Paper: http://...etics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.10042923678 days ago
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Opportunity posts
Postdoctoral position in bioinformatics @ Sweden
...researcher to work with large-scale sequence data analysis. The posit...and analysis of next generation DNA sequencing, in particular compara...omics and gene expression analysis (RNA-seq). We have strong interdis...particular from next generation DNA sequencing, is highly valued. The...3963 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...main tracks on Clinical Exome Sequencing, High Scale Computing, Genome Informatics, and RNA-Seq and Transcriptome Analysis, a...ll tackle the huge amounts of sequencing data produced by new t...variants. Members of the international community will come tog...3932 days ago
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ResearchLabs posts
- ...simplified protein models, investigation of protein energy landscapes, detection of RNA sequence/structure motifs, prediction and evaluation of alternative splice forms, description and detection of regulatory sequences. Link @ http://www.b...
3955 days ago
- Seamless integration of a series of biological processes finally manifests as what we perceive as "Life". In order...approaches and X-ray crystallography. Our current research interests pertains to RNA...
3900 days ago
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Video
RNA interference (RNAi): by Nature Video
RNA interference (RNAi) is an important process, used by many different...of genes. This animation explains how RNAi works and introduces the two main players: small interfering RNAs (siRNAs) and microRNAs (miRN...NA) and how RNAi can silence specific mRNA...3908 days ago
- ...DNA is copied into messenger RNA (mRNA) for protein production. Orig...x arrives carrying the enzyme RNA polymerase. It manoeuvres the...teins, which bind to specific sequences of DNA known as enhance...es the copying mechanism. The RNA polymerase unzips a small por...
3399 days ago
Bio-Scripts
- ..."GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA; $RNA =~ s/T/U/g; print "RNA sequence is $RNA\n"; #find the...ution operator #first - reverse the sequence my $rcDNA = reverse($DN...ation operator #first - reverse the sequence $rcDNA = reverse($DNA);...
2932 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2932 days ago
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Groups
Python is a programming language that lets you work more quickly and integrate yo...n lovers. Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3960 days ago
Tags
- A Computational biologist, currently investigating the impact of transposable elements on the adaptation of the rice genome under fungal pathogen challenges and genome duplication. Experienced in using next-generation sequencing technologies like shotgun sequencing, linked reads, and long-read se...
Skills: Programming (Python, Linux, Bash, R), Computational Biology, NGS technologies, WGS, RNA Seq, Repeats, Variant Calling
1155 days ago
Comments
Comment on "Tools for Differential expression analysis"
...n analysis, including: DESeq2: This R package is widely used for analyzing RNA-Seq data. It uses a negative bino...ential expression analysis of RNA-Seq data. It uses a non-param...al expression analysis of RNA-Seq data. It uses a method based...435 days ago
- kallisto can process either single-end or paired-end reads. The default running mode is paired-end and requir...use the --plaintext mode to output plaintext abundance estimates. Alterna...
1376 days ago
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