Results for "RNA sequencing"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install seve...pers: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglibbiojava-java - Java API to...3952 days ago
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS application note describes how i...n T-regulatory and T-helper cells. Learn how the gene expression profiles from RNA-Seq an...3199 days ago
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Bookmarks
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3903 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant callin...onstrate that while existing tools are based on data generated from a specific sequencing technology, the models propos...1148 days ago
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Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There ar...ut new therapeutic target. One way is to look the relationships between mRNA, methylation and miRNA data o...
3562 days ago
- Genome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.
3433 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...3953 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3946 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, i...uence analysis Sequence and Site objects, with various Alphabet support (DNA, RNA, Prote...3949 days ago
Genome Assembly Tools and Software - PART2 !!
...their expression levels from RNA-Seq reads. CEM 0.9.1 – Transc...ling and scaffolding Illumina sequencing data of microbial communities...ned to heuristically assemble RNA-seq reads in the absence of a refere...nd reads from high throughput sequencing platforms, e.g. Illumina and...2687 days ago
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Top-level pages
- The completion of the first human genome...s was just a start of the modern DNA sequencing era which resulted in further...ed strategies of high-throughput DNA sequencing, so called the “high-th...quo; (HT-NGS). The decreasing genome sequencing cost and desire to explore an...
3949 days ago
- ...matics component. The goal of sequencing projects, for example,...ce data: The primary data of sequencing projects are DNA seque...classification with 70S, 30S RNAs established the separate kingdom of...2:185–219The Genome International Sequencing Consortium (2001) Initial seq...
3949 days ago
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Wire posts
News
- ..., Centre for GeoGenetics have beaten sequencing of the ancient DNA&nbs...10 times. In collaboration with Danish and international colleagues , they have...rse lineage." http://www.nature.com/nature/journal/v499/n7456/full/nature12323.html h...
3813 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science mee...ture state of all aspects and applications of Next Generation Sequencing. More at >> http:...3920 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...ific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. I...e in NGS data analysis, and will benefit as well from national and international collaborative networks (Aplibi...3950 days ago
- ...ed data that underlies this project consists of high-throughput sequencing of DNA and mRNA of populations and isolates. For ans...prerequisite for this position. Experience with high throughput sequencing analysis methods, machine lea...
3950 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as...ethods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational com...
3949 days ago
- The research interest of this group include constraint programming, structure predict...tigation of protein energy landscapes, detection of RNA sequence/structure motifs, prediction and evaluation of alternative sp...
3941 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data...l graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biologi...3904 days ago
RNA interference (RNAi): by Nature Video
RNA interference (RNAi) is an important process, used by many different...of genes. This animation explains how RNAi works and introduces the two main players: small interfering RNAs (siRNAs) and microRNAs (miRN...A) and how RNAi can silence specific mRNAs to st...3894 days ago
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Bio-Scripts
- #!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA...
2918 days ago
Perl script introduces control structures, arrays and hashes.
#!/usr/bin/env perl use strict; use warnings; my @first_array = ('DNA', 'ATGCGTGC', 5, 'RNA', 'AUGC'); print $first_arra...for (my $i=0; $i 'ATCGATGCT', 'RNA' => 'A...2864 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high...xplosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques....3418 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3199 days ago
Groups
Python is a programming language that lets you work more quickly and integrate you.... Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3947 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic comple...3909 days ago
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Tags
Marie Curie PhD position available immediately
Sub-project 10: Development of bioinformatic tools for the analysis of MACE data Host Organizations GenXPRO (Germany) Objectives : The ESR will be in charge of standardising pipelines that will be used for RNA-seq and MACE analyses by all the participants. He will be involved in performing next...Tags: bioinformatics, RNA sequencing, proteomics
3300 days ago
PhD student position available (granted by German Research Council, DFG)
https://www.jobvector.de/jobs-stellenangebote/biologie-life-sciences/forschung-entwicklung/phd-student-position-available-granted-by-german-research-council-dfg-128681.html?suid=dca4aca58bf8b8df84a0e48d0d645f5a32f3c66a Qualification profile PhD student candidates should have a degree in a rel...Tags: RNA sequencing, pathways, neuromuscular, biology
1543 days ago
Comments
- ...pt htseq-qa takes a file with sequencing reads (either raw or a...N mRIN - Assessing mRNA integrity directly from RNA-Seq data. MultiQC Multi...control tool designed for DNA sequencing data for raw data, alignment,...n around the data collected. RNA-SeQC RNA-SeQCis a tool with app...
2139 days ago
- OmiRas, a web server (from GenXPro Frankfurt) for the annotation, comparison and visualization of interaction networks of non-coding RNAs derived from small RNA-Sequencing experiments of two different conditions. http://tools.genxpro.net/omiras
3589 days ago
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