Results for "Single molecule Sequencing"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several...ers: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglibbiojava-java - Java API to...3943 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a co...it encompasses multiple genes, an area containing single genes, or areas devoid of known...may be represented by sequenced chromosomes (pseudomolecules)...2603 days ago
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Bookmarks
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3894 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. W...nstrate that while existing tools are based on data generated from a specific sequencing technology, the models propos...1139 days ago
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Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical mem...lipid-exposed faces of the TM domains. Results: In a cross validated test on single seq...3937 days ago
India's own first drug - from Biocon.
Psoriasis is immune-mediated disease that effects the skin. the Disease on an average affects about 10-20 million In...t publicly-held biotechnology firm, launched its second novel 'lab-to-market' molecule,...3912 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...3944 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3937 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows fo...N. Detecting groups of coevolving positions in a molecule: a clustering approach. BMC E...approach for detecting coevolving positions in a molecule....3940 days ago
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced fun...Lisp, Dylan, Pike, and CLU. The standard 1.8.7 implementation is written in C, as a single-pas...
3940 days ago
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Top-level pages
- The completion of the first human genome dra...was just a start of the modern DNA sequencing era which resulted in further...d strategies of high-throughput DNA sequencing, so called the “high-th...uo; (HT-NGS). The decreasing genome sequencing cost and desire to explore an...
3940 days ago
- ...tein interactions; analysing single nucleotide polymorphisms to hun...ng the 3D structure of a macromolecule is crucial for understanding it...etail on the structure level. Single Nucleotide Polymorphisms can be m...h;219The Genome International Sequencing Consortium (2001) Initial seq...
3940 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of the ancient DNA recor...
3804 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science mee...ture state of all aspects and applications of Next Generation Sequencing. More at >> http:...3911 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 labor...Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the c...3941 days ago
- van Noort Group is looking for PhD fellows We currently...nderlies this project consists of high-throughput sequencing of DNA and mRNA of population...or this position. Experience with high throughput sequencing analysis methods, machine lea...
3941 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Pla...thods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational com...
3940 days ago
The Laboratoire de genomique fonctionelle
One persistent challenge of post genome biology remains the determination of the functions o...genes. In mammals this task is formidable given that a single g...alternative pre-mRNA splicing. Protein isoforms from a single gen...3940 days ago
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Video
- View more AMAZING medical animations at http://www.nucleuslibrary.com To download FREE medi...wn as conception. Fertilization is the epic story of a single s...he molecular level, genetic material from the egg and a single spe...
3810 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data A...graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biologi...3894 days ago
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Bio-Scripts
- #!/usr/bin/env perl # Usage: fastaRead.pl data.fa use strict; use warnings; my $filename = $ARGV[0]; my $sequence; open my $fileH, "
2907 days ago
- #USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE...a t distribution #USAGE: CI_normal(matrix[,x],97.5) - single c...ormal distribution #USAGE: CI_tdist(matrix[,x],97.5) - single col...
2864 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high dema...plosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques....3409 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3190 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and B...of the tools. Considering this, if the field carries on developing like this, every single res...2354 days ago
Groups
Python is a programming language that lets you work more quickly and integrate your sy...Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python...3938 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic comple...3900 days ago
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Tags
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of the ancient DNA record by about 10 times. In collaboration with Danish and international colleagues , they have able to record important genomic changes over the last 700.000 year...
Tags: Horse, molecular clock, equids, single molecule sequencing
3804 days ago
Single molecule Sequencing (SMS)
SMS is now slowly gaining place in sequencing world, more and more scientists now keen to use SMS method to sequence molecules in comparatively less complex protocal and less time. One of most successful so far is SMRT from Pacbio and others will be flood the market soon and may be one day it rep...Tags: Single molecule Sequencing, nanopore, pacbio smrt, DNA
3220 days ago
Comments
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1943 days ago
Comment on "List of popular bioinformatics software/tools"
Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR) http://bix.ucsd.edu/projects/blasr/3002 days ago
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