Results for "Species"
Blogs
...demo.ncsa.uiuc.edu/, which is a collaborative project designed to provide a visual means for simultaneously comparing genomes of multiple amniote species. The tool removes the burden...3951 days ago
Tools to detect synteny blocks regions among multiple genomes
...o synteny blocks from two related species (e.g., humans and mice) will...on chromosome of each of the two species) on several genomes. Figur...gous synteny blocks (HSB) amongst species. Some of them which were comm...lignments both within and between species. It is intended to help scien...2621 days ago
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Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...ific sequencing technology, the models proposed in DAVI are generic and can be used across different NGS technologies as well as across different species https://iopscience.iop.org/a...1157 days ago
- ...program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequen...
2950 days ago
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Files
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes.
...stor unless otherwise stated (macrochromosomal fusions not listed). The overall pattern of microchromosome stability and rearrangement across the species is illustrated Jarvis et al....1998 days ago
Evaluation of genome assembly software based on long reads
...evolution and sequence diversity. They have also been applied to resequencing analyses, to create detailed maps of structural variations in many species. Also, these new technologies...1931 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ndividuals viral genomes (also known as quasi-species). Genomix 0.2.11 – Par...otype-based Genome Assembler for Brassicaceae SpeciesKGBassembler (Brassicacea...mbly and Annotation of Transcriptomes for any SpeciesThe est2assembly pla...2697 days ago
Bioinformatics in Africa: Part5 - Nigeria
...level and proteomics studies on various species of malaria par...n comparative genome analysis of various species of Plasmodium ...1195 days ago
Top-level pages
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Eviden...olutionary relatedness among various groups of organisms (for example, species or populations), which is dis...3957 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ust, simple genotyping-by-sequencing (GBS) approach for high diversity species. Elshire et al., PLoS One 6(5...method for de novo SNP discovery and genotyping in model and non-model species. Peterson et al, PLoS One 7(5...3791 days ago
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Wire posts
News
Barber pole worm , sheep pathogen sequenced !!!
Haemonchus contortus is a highly pathogenic parasitic nematode of that can infect a large number of wild and domesticated ruminant species and is the most economically important paras...3908 days ago
- ...enus Pandoravirus dwarfs other viruses, which range in size from about 50 nanometers up to 100 nanometers. A genus is a taxonomic ranking between species and family. Find more...
3902 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...te will be in charge of the detection of polymorphisms including structural variants, of the comparison of multiple and diverse genomes of a same species and of the construction of pa...3960 days ago
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
...t lab unit of the group using next generation sequencing technologies for a unique collection of tissues from representative mammals and outgroup species (e.g., birds). Topics of curr...3930 days ago
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ResearchLabs posts
- ...vides a quantitative framework for studying speciation, geographic variation and genome evolution; systematics, which acknowledges that the focal species of any study has relatives th...
3840 days ago
- ...nced and analyzed the genome of the invasive red fire ant Solenopsis invicta (PNAS 2011) 2. discovered that a fundamental social trait in this species (how many queens are accepted...
3570 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
...occur. The genome comparison system developed by the Sakakibara Lab calculates homologous sequences called anchors, which are conserved between species. If the genome is considered...3928 days ago
- ..., with Michael Ashburner and Gerald Rubin, a bioinformatics initiative to unify the representation of gene and gene product attributes across all species, called Gene Ontology. He gra...
3884 days ago
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Bio-Scripts
Perl script to run in parellel !
...finished run with parameters $chr_set!\n"; } sub touch { my ($fn, $seq) = @_; open FILE, ">$fn" or die $!; system ("augustus --species=caenorhabditis --outfile=$fn...1698 days ago
Pack a perl program with their dependencies on Ubuntu !
...horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where......1522 days ago
Groups
Comparative genomics is a field of biological research in which the genome sequences of different species — human, mouse, and a wide variety of other organisms from bacteria to chimpanzees — are compared. This group is dedicated to Comparative genomics ...2541 days ago
Tags
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for collections of contigs with a view to separating out th...
Tags: Bioinformatics, Blobsplorer, Visualization, Assembled DNA, Sequence, contigs, Species, Pools.
2893 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ne content of two or more related species. Here are some general steps...ome synteny analysis: Choose the species: Select the species that you...genome sequences of the selected species from a public database, such...lutionary history of the compared species. Validate the results: Valid...434 days ago
- ...a early as possible). Suggestion: Do you have any closest species/organism/strain ? If so try t...lastn -query gene1.fa -out gene1.blast.txt -task megablast -db closest_species -evalue 1e-10 -best_hit_score...
2645 days ago
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