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BBTools for bioinformatician !
...mic-like distribution. It could also be used for RNA-seq when using a transcriptome reference.The coverage is...---------------------------------------------Pileup.sh To generate transcript coverage stats C...2417 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...ipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo transcript discovery and differential an...3077 days ago
2957 days ago
Genome Assembly Tools and Software - PART2 !!
...ssemblyStage1: Perfectly aligns TranscriptSimulator reads to their nucle...ssion Approach to RNA-Seq Based Transcriptome AssemblyIsoLasso is a.... Oases 0.2.08 – De novo Transcriptome Assembler for very short r...vo Assembly of Roche-454/Sanger Transcriptome SequencesiAssembler i...2832 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...bMedCentral Biases in Illumina transcriptome sequencing caused by rando...es 41:21–32, 2013 PubMed Transcriptome analysis Assembly and com...ods.] Optimization of de novo transcriptome assembly from next-generat...HTS and R-Cloud for analysis of transcriptome data3925 days ago
Apps for Busy Bioinformatics Researchers !!!
...ecies, based on gene symbol search. The application provides gene and transcript cross reference information f...also contains an integrated genome browser with information on genes, transcripts, exons and SNPs. More @&nbs...3687 days ago
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2517 days ago
Bioinformatics PhD studentship available in New Zealand
...vailable in New Zealand The importance of transcriptional control has been explore...ecent shifts towards large-scale analyses of transcriptional regulation on a sequence...a Curriculum Vitae, a copy of your academic transcript, a sample of your written sci...4094 days ago
3927 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...links, such as specific molecular interactions, in eukaryotic cell signaling systems using comprehensive genomics data like genome sequence and transcript profiles. We are interested t...4094 days ago
How DNA is Packaged (Advanced)
...ion of the 6,400,000,000 basepairs (DNA building blocks) that make up your DNA. Originally created for DNA Interactive ( http://www.dnai.org ). TRANSCRIPT: In this animation we'll see...4023 days ago
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Install StringTie on ubuntu / Linux !
#StringTie is a software program to perform transcript assembly and quantification of RNAseq data. The binary distributions are available so to install we can just download this distrib...969 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...roject CODE:5153403)) is, applying a bioinformatics-supported genome, transcriptome, proteome, and metabolome...osis and scanning kit based on this profile. Alterations in the gene, transcript, protein, and metabolite prof...2508 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, seehttp://arthropods.eugenes.org/EvidentialGene/Construction refers to the co...Tags: EvidentialGene, tr2aacds, mRNA, Transcript, Assembly, Software, Tools
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Comment on "Running Trinity on RNA-seq !"
...ogy of your organism based on your assembled transcripts and the input RNA-Seq data....Such studies might include: Quantifying transcript and gene abundance. This is a...nsDecoder and functionally annotate the transcripts using Trinotate. I...2269 days ago