Results for "Tree"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...anipulation # sudo apt-get install bioperl If it is installed then flash the following message: Reading package lists... DoneBuilding dependency tree ...3947 days ago
- ...the dependencies. Then watch it work.To prevent creating conflicts with the software that Apple installs by default, Fink creates its own directory tree at /sw where it installs most...
3936 days ago
- +9 more Blogs
Bookmarks
Public Databases for Bioinformatics !
...goldenPath/hg38/bigZips/hg38.fa.gz. For use case 2 we used the set of narrowPeak files summarized in https://github.com/wkopp/janggu_usecases/tree/master/extra/urls.txt (a...1136 days ago
- ...s the rates for the possible transitions assumed by the model, infers the set of ancestral chromosome numbers, and estimates the location along the tree for which polyploidy events (...
3385 days ago
- +56 more Bookmarks
Files
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes.
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes. No interchromosomal microchromosome fusions from the avian ancestor unless otherw...1984 days ago
Pages
Bio++ : C Language libraries for your biological need
...public databases like GenBank, EMBL or SwissProt,Algorithms for plotting trees, with support for vector for...enetics and molecular evolution Data structure and IO Phylogenetic trees.IO from newick files, with s...3944 days ago
BioRuby :Ruby packages for biologist
...y-lang.org/project/bioruby/ BioRuby Project Discussion Grouphttp://portal.open-bio.org/mailman/listinfo/bioruby BioRuby related Projects: Project treehttp://rubyforge.org/softwarem...3944 days ago
- +4 more Pages
Top-level pages
- ...so applied to various other data, e.g. taxonomy trees, relationship data from meta...t, protein 3D structure alignment, phylogenetic tree construction, prediction and...ry aspects, by the construction of phylogenetic trees from the pairwise difference...
3944 days ago
- ...into predefined groups. For example, an email program might attempt to classify an email as legitimate or spam. Common algorithms include decision tree learning, nearest neighbor, n...
3943 days ago
- +17 more Top-level pages
Wire posts
News
- ...genes through the visualization of phylogenetic trees and multiple sequence alignm...h are based on the analysis of the phylogenetic trees. The automated pipeline used...ublic download section with the complete set of trees, alignments and orthology pr...
3915 days ago
Update Genome Workbench 2.7.15 released
...ce views, various alignment views, phylogenetic tree views, and tabular views of d...oved tooltips for toolbar buttons Phylogenetic Tree Builder Tool: improved diagno...d issues for showing labels of collapsed nodes Tree View: added an option to stop...3717 days ago
- +3 more News
Opportunity posts
Protein function annotation and machine learning - UPMC - Paris, France
...(HPC) environments. The idea is to uncover as much as possible the evolutionary processes of protein sequences that took place throughout the whole tree of life and that affected the...3561 days ago
2 positions on the evolutionary analysis of biological sequences in Montpellier - France
....ibc-montpellier.fr), concerns evolutionary analyses of large-scale genomic data -- including the inference of very large phylogenies, gene/species tree reconciliation, comparative g...3138 days ago
- +3 more Opportunity posts
ResearchLabs posts
- My main topics of interest are: The impact of non tree-like evolution such as horizontal gene transfers and hybridization on species biology Evolution and adaptation of animals i...
1259 days ago
Video
- ...netics. The evolutionary relationships of organisms are discovered through both morphological and molecular data. A specific type of phylogenetic tree, the cladogram, is also cover...
3905 days ago
Mathematics for Computing : Huffman Code (Tree Approach)
Determining a Huffman code for a discrete memoryless source, using the Huffman Tree algorithm3876 days ago
- +1 more Video
Bio-Scripts
Converting from Windows-style to UNIX-style line endings with dos2unix
...ad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bioqueen: Reading package lists... Done Building dependency tree Reading state informa...1173 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...-320-15ISK:~/Downloads/$ sudo apt install ./atom-amd64.deb [sudo] password for bioqueen: Reading package lists... Done Building dependency tree Reading state informa...1172 days ago
- +25 more Bio-Scripts
Tags
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field terminator is "\t|\t" Row terminator is "\t|\n" nodes.dmp file consists of taxonomy nodes. The description for each node includes the following fields: tax_id -- node id in GenBank taxonomy datab...Tags: taxonomy, database, classification, tree
657 days ago
Comments
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...(4.936 :: 4.900) RNA Biology (4.974 :: 5.237) Scientific Reports (5.578 :: 5.597) Scientific Data FEBS Journal (4.001 :: 4.068) Tree Genetics & Genomes (...1101 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ctive algorithm using C++. https://phys.org/news/2020-06-scientists-synteny-blocks-animals.html https://github.com/ComparativeGenomicsToolkit/hal/tree/master/synteny1407 days ago
- +6 more Comments
