3265 days ago
List of comparative genomics resources !
...ganisms. ATGC -- Alignable Tight Genomic Clusters Database Find information ab...etection of transcription factor binding site clusters associated with conventional...s pacificus. ProtClustDB -- NCBI Protein Clusters Database Find information ab...678 days ago
RNA-Seq De novo Assembly Using Trinity
...nscripts for a dominant isoform, but then reports just the unique portions of alternatively spliced transcripts. Chrysalis clusters the Inchworm contigs into clusters and constructs complete de Br...2966 days ago
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Genome Assembly Tools and Software - PART2 !!
...rt read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its p...2686 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...iol 11(8):R86, 2010 PubMedCentral Galaxy Cloudman: Delivering compute clusters. BMC Bioinformatics 11(Suppl....iol. 11(5):207, 2010 Pubmed Galaxy Cloudman: delivering cloud compute clusters. Afgan et al, BMC Bioinformat...3780 days ago
List of bioinformatics open source projects/software.
...ontinuous Integration tools and techniques in Bioinformatics. It uses Jenkins and its plug-in API to create biology workflows and manage computer clusters. caCORE ontologic r...3757 days ago
3763 days ago
Conserved Domain Database (CDD) version 3.11 released
...region on the query sequence, the best0-scoring domain model (if any) from each of CDD’s database providers (Pfam, SMART, COG, TIGRFAMs, Protein Clusters, and the NCBI in-house curati...3728 days ago
Research Fellow @ Mendel laboratory
...lation (artificial knockout, redundancy and lethality analysis, gene set essentiality); (iii) developing of ad-hoc software solutions/routines on clusters of CPUs and GPUs. The corr...3814 days ago
Bioinformatic/computational postdoc at South Dakota State University
...rm computational analysis of high throughput, next-generation sequence data and possess the ability to use bioinformatics analytical tools on HPC clusters. Required Qualification...3707 days ago
Des Higgins: Visualizing Multiple Sequence Alignments
...ments with a very large number of sequences, and presents several approaches to this challenge, including faster algorithms and abstract views of clusters of alignments. This talk was...3722 days ago
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Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
.../author/recology-r/ Talk introducing phylogenetics in R: http://www.r-bloggers.com/my-talk-on-doing-phylogenetics-in-r-2/ Finding meaningful clusters in trees phytools blog, &ldqu...3908 days ago