Results for "databases"
Users
About me: ...es ina systems biology , network biology , systems neuroscience , computational biology , mathematical biology , the paramoount cammond in omics databases. whatever study in a biology...3709 days ago
- About me: ...e software and open access, all resouces develoed at his group are free for scientific use. His group developed more than 180 web servers and 20 databases in the field of computer-aide...
3488 days ago
Blogs
List of bioinformatics packages for NGS analysis !
...ugh documentation. Part of the Open Bioinformatics Foundation. Contains the very useful Entrez package for API access to the NCBI databases. [ paper-2009 |&nbs...1136 days ago
Structural variation: the hidden genomic treasure
...ects of selection shaping their evolutionary trajectories. Structure variation sequencing signature (Source: NatRev Genetics) Related tools, databases and publications are listed b...2696 days ago
- +5 more Blogs
Bookmarks
Public Databases for Bioinformatics !
...://www.encodeproject.org/files/ENCFF177HHM/@@download/ENCFF177HHM.bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release...1133 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...pproaches to molecular biology, multiscale modeling, pathways,gene networks. Computational Proteomics: Filtering and indexing sequence databases, Peptide quantification and i...3492 days ago
- +32 more Bookmarks
Pages
Bio++ : C Language libraries for your biological need
...ed numerical tools (numerical derivatives, parameter transforms...),A new library, Bio++ RAA (Remote Acnuc Access), allowing you to fetch public databases like GenBank, EMBL or SwissPr...3941 days ago
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explain...3696 days ago
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Top-level pages
- ...ation of extensive electronic databases on genomes and protein sequen...organisation of knowledge in databases, sequence analysis, and struc...e easily through links. Also databases of scientific literature (suc...and drug resistance. Patient databases with genetic profiles, e.g. f...
3941 days ago
- ...of hidden predictive information from large databases. Data mining is becoming an i...ful knowledge the data is hiding. They scour databases for hidden patterns, finding...3_05/03_03_05.pdf DATA MINING OF MICROARRAY DATABASES FOR HUMAN LUNG CANCER: h...
3940 days ago
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Wire posts
News
BEReX : Biomedical Entity-Relation eXplorer
...gration, search, and exploration tool. BEReX integrates eight popular databases (STRING, DrugBank, KEGG, Phar...integrated network by combining the information available from these databases. Users search the integrated...3833 days ago
Conserved Domain Database (CDD) version 3.11 released
...-specific score matrices (PSSMs) have been recomputed for many models in CDD, and frequency tables have been added to the PSSMs; The search databases distributed as part of this r...3721 days ago
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Opportunity posts
- ...skills are a prerequisite for this position. Experience with high throughput sequencing analysis methods, machine learning, protein interaction databases, perl/python scripting or Bio...
3942 days ago
Researcher in computer science/biology
.... Basic programming or scripting skills are required. Experience in Python, R, Perl, Linux-based operating systems and moreover knowledge of databases and web programming will be a...3940 days ago
- +20 more Opportunity posts
ResearchLabs posts
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...through the development of open-source biological pathway and network databases and visualization and analysi...al processes using molecular profiles Biological pathway and network databases and analysis tools Link @...3941 days ago
- ...ses on large DNA viruses: Poxviruses African Swine Fever Viruses Iridoviruses Baculoviruses Research Area Custom searches of the viral databases Building new tools . The ge...
3941 days ago
- +5 more ResearchLabs posts
Video
Introduction to Bioinformatics - Week 2 - Lecture 1
...y OpenCourseWare [ http://ocw.metu.edu.tr ] Course Title: Introduction to Bioinformatics Lecture Title: Introduction to biology, biological databases, and high-throughput data sou...3897 days ago
Introduction to Bioinformatics - Week 2 - Lecture 2
...y OpenCourseWare [ http://ocw.metu.edu.tr ] Course Title: Introduction to Bioinformatics Lecture Title: Introduction to biology, biological databases, and high-throughput data sou...3897 days ago
Bio-Scripts
- ...ty of disk space available. Databases size scales linearly with sequence length. With default parameters,databases are are roughly...
2687 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...subunit (23S/28S ribosomal RNAs) #SSU: Small subunit (16S/18S ribosomal RNAs) my $silva_url_LSU = 'https://www.arb-silva.de/fileadmin/silva_databases/release_138_1/Exports/SILVA_1...1154 days ago
- +5 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...If there will be bioinformatics company owned by you in future, What are your company focus and aim? With the increasing amount of data in databases, there is already a massive n...2356 days ago
Groups
...ncsb/index.php/csbj/article/view/csbj.201301004/205 Alignment tools for this include: mz-Mine XCMS (R code script), and Metalign Metabolomics databases for searching the potential c...3699 days ago
Tags
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined t...Tags: Bioinformatics, Entrez Direct, EDirect, NCBI, Databases, Functions, EDirect, XML, Format, Queries, EDirect, UNIX, Entrez.
2749 days ago
Cleaner BLAST Databases for More Accurate Results
Do you use BLAST to identify a sequence or the evolutionary scope of a gene? That can be challenging if contaminated and misclassified sequences are in the BLAST databases and show up in your search results. To address this problem, we now use the NCBI quality assurance tools liste...Tags: Cleaner, BLAST, Databases, Accurate, Results
6 days ago
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Comments
Comment on "Basic command-line to run BLAST"
...e tailored to different types of queries and databases. The most common programs are...ches can be performed against many different databases, including the NCBI GenBank,...ST is a powerful tool for searching sequence databases and can be used for many diff...417 days ago
Comment on "Command line to create blast uniref database !"
wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz gunzip -v uniref90.fasta.gz makeblastdb -in uniref90.fasta -dbtype prot -input_type fasta -out uniref90.fasta939 days ago
- +6 more Comments
