1068 days ago
Install trimmomatic using Conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving envi...1068 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1068 days ago
1003 days ago
Tadpole is 250x faster than SPADes assembler !
...=-1 Remove reads containing kmers at or below this depth. Pairs are removed if either read fails. lowdepthfraction=0 (ldf) Require at least this fracti...990 days ago
Get the Linux system information !
...ection in 1 ) result=$(echo "Hostname: $HOSTNAME"; uptime) display_result "System Information" ;; 2 ) result=$(df -h) display_result "Di...962 days ago
Command line to download blast database / protein
...ps://ftp.ncbi.nlm.nih.gov/blast/db/ # Database detail / description nr.*tar.gz | Non-redundant protein sequences from GenPept, Swissprot, PIR, PDF, PDB, and NCBI RefSeq #Fir...957 days ago
678 days ago
Conda command to install checkV
...42_0 149 KB conda-forge checkv-1.0.1 | pyhdfd78af_0 33 KB biocon...68.0-h11c811c_1000 checkv bioconda/noarch::checkv-1.0.1-pyhdfd78af_0 diamond...649 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data432 days ago