Results for "environment"
Bio-Scripts
Bash command to install bwa, samtools, picard !
...repodata.json): done Solving environment: - The environment is inconsistent, please check...ne ## Package Plan ## environment location: /data/sata_data/wor...repodata.json): done Solving environment: done ## Package Plan ##...1555 days ago
Bash command to install GATK, Bedtools and SnpEff !
...adata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /data/sata_data/wor...adata (repodata.json): done Solving environment: done ## Package Plan ##...adata (repodata.json): done Solving environment: done ## Package Plan ##...1555 days ago
- ...d-2 testGATK]$ conda update -n base -c defaults conda Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /data/sata_data/wor...
1546 days ago
- jit@jit-HP-Pro-3335-MT:~$ java -version openjdk version "11.0.6" 2020-01-14 OpenJDK Runtime Environment (build 11.0.6+10-post-Ubuntu-1ubuntu118.04.1) OpenJDK 64-Bit Server VM (build...
1539 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$ cd jittmp/ jit@jit-HP-Pro-3335-MT:~/Downloads/jittmp$ curl -O https://repo.anacon...1511 days ago
Install Ragout genome assembler
$ conda install -c bioconda ragout Collecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/anaconda3 added / updated specs:...1464 days ago
- ...ollecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/anaconda3...ollecting package metadata (repodata.json): done Solving environment: done ## Package Plan ##...
1462 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists...
1215 days ago
Install SibeliaZ in your Linux cluster !
...data (current_repodata.json): done Solving environment: failed with initial frozen s...lve. Retrying with flexible solve. Solving environment: failed with repodata from cu...age metadata (repodata.json): done Solving environment: done ## Package Plan ##...1232 days ago
- (JitMetaENV) ➜ JitMeta conda install -c bioconda fastqc Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1216 days ago
