Results for "genome assembly"
Blogs
Five points for bioinformatics software/tools
...s not absolve you of the need to actually read and research the type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At the end,...3700 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used...ect designed to provide a visual means for simultaneously comparing genomes...
3932 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3937 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a day...g fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein s...ession, constructing evolutionary trees, analyzing genome r...
3937 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour w...rated from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file...3781 days ago
- Some fish kidnaped a bioinformatician for their genome analysis.
3845 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages....3944 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3937 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a...l features that would otherwise require the use of Assembly Language. As Dennis Ritchie...plementation language efficient enough to displace assembly language, yet sufficiently ab...3940 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, datab...for the Ruby language. This project is supported by University of Tokyo (Human Genome C...3939 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA sequenci...eration sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...logically suitable language to handle ever growing genome o...
3940 days ago
- ...s on three types of datasets: genome sequences, macromolecular str...s DataBase for the C. elegans genome, FLYBASE for D. melanogaster...lds can be analysed for whole genomes. Protein–protein inter...;genome random sequencing and assembly of haemophilus–influenz...
3939 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of th...gy.htm http://geogenetics.ku.dk/latest-news/a-700.000-year-old-horse-gets-its-genome-s...
3804 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome S...3911 days ago
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Opportunity posts
Livestock Functional Genomics Summer School (LFG 2013)
*Livestock Functional Genomics Summer School - Call for applications* 1st Livestock Functional Genomics Summer S...ck big molecular data, and be able to manipulate high density genotypes, whole genome s...3921 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference SciGenom R...In the ten years since the first human reference genome was completed for US$3 billio...great reduction in sequencing cost. Today a human genome c...3915 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which cau...equence data in cancer Methods for analysis of structural variation in cancer genomes...
3940 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revolution...
3940 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this....BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI...rmatician No.1 Mera Naam Tool Developer Hum Apke Genome M...3911 days ago
What a bioinformatician always dream for ???
Well established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome o...3837 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all...e life. One is example is the genome. In all organisms, DNA contai...ation, and this is called the genome. But the amount of informatio...erved between species. If the genome is considered as a long text,...3909 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics,...Description: There is an urgent need to translate genome-era discoveries into clinical...tes, and evaluating patients presenting with whole genomes...3903 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1128 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query...1093 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a prog...ble with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and...3523 days ago
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome p...3408 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute...ng for (AKMARK (Project CODE:5153403)) is, applying a bioinformatics-supported genome,...2354 days ago
Groups
INTIMATE secrets hidden in your DNA could be stolen without you even realising...ing a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan of your genome, revealing DNA variants that...t or bioinformatician you hack the entire genome t...3945 days ago
...c graphical models Gibbs sampling for motif finding Biclustering algorithms Genome Assembly Developement of new algorithms to speed up the assembly procedure Comparative genomics approaches in genome assembly. Evolutionary Gen...3935 days ago
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Comments
Comment on "Short-read assembly using Spades !"
...Short-read assembly is the process of constructing a genome sequence from a large number...reads. SPAdes (St. Petersburg genome assembler) is a popular software tool for short-read assembly. Here are the general steps for short-read assembly using SPAdes: Quality co...407 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads gene...to use SPAdes for short-read assembly: Install SPAdes: SPAdes...everal options for tuning the assembly parameters, such as adjusting...413 days ago
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