2507 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...wnload. In this example, let us search, download and install XML::Parser Perl module. I have downloaded the XML-Parser-2.36.tar.gz to /home/download# cd /home/download# gzip -d XML-Parser-2.36.tar.gz#...3952 days ago
3942 days ago
3655 days ago
2990 days ago
Awesome perl frameworks, libraries and software - PART 4
...atrol - Edge-authentication ipfire/ipfire-2.x - IPFire 2.x development tree dgl/cpangrep - Search code on CPAN with Regexps bugzilla/bugzilla - Read-only mirror o...2496 days ago
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page provide links of some the good computer, biology and related tutorials. Introducti...3133 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ssreads) Input: raw NGS datasets; fasta, fastq, gzipped or not; no reference ge...ide own fasta file for hg19 genome, Output: vcf.gz, vtf.gz, and baf.tsv.gz outpu...rdquo; Input: VCF BioR-Supported Catalogs (tar-gzip files): dbSNP, 1000 genomes...2911 days ago
3307 days ago
2926 days ago
Visiting Scientist - Computational Genomics (two positions)
...dged, however only short listed candidates will be contacted. Apply here https://recruit.zoho.com/ats/Portal.na?digest=T642sgLYWZOStExJ77cPrcM*sIMGZETWw4yPxngbmHA-3592 days ago
Faculty post at Zhejiang University
...ge areas of the relevant field at ZJU. As one of the leading research-intensive universities in China, ZJU is located in the beautiful city of Hangzhou. Successful candidates wil...3619 days ago
Genomics and Personalized Medicine Breakthroughs
http://bit.ly/e8QGzY Human genome mapping is now enabling a breakthrough in medical innovation -- personalized medicine. What does this mean for patients? We can now identify...3628 days ago
Extract ids from file with perl
...#################################### #Open and Read a file sub read_fh { my $filename = shift @_; my $filehandle; if ($filename =~ /gz$/) { open $filehandl...2610 days ago
Download the genome from NCBI using bash script/command
...gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_fungi # -...gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_bacteria...gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_protozoa...2534 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research inter...2364 days ago
Web prgramming for biologist/bioinformatician
PHP is quite popular these days (in combination with mySQL (query and design db), CSS (for styling) and HTML) for web programming and online database management for p...3638 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...va-ont \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ | gzip -1 > ./minimap.paf.gz miniasm -f \ ../../trim...798 days ago
Comment on "BBTools for bioinformatician !"
Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/920 days ago