Results for "methods"
Blogs
List of gene ontology software and tools
...tion experiments. The main function of GOEAST is to identify significantly enriched GO terms among give lists of genes using accurate statistical methods. http://omicslab.genetics.ac...3711 days ago
Five key traits to seek out in potential bioinformatics candidates !!!
...stories may place one candidate above the rest. In addition to achieve that, the bioinformatician should be agile enough to quickly modify their methods to suit changes within a part...3192 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3911 days ago
Collection of molecular modelling and drug design related tutorial ...
...roducible workflow for each protocol. This year's Collection highlights exciting advances that increase the usability of Rosetta, improve current methods, and introduce completely new...3821 days ago
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Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...re topology for 77% of the sequences in a standard dataset of 86 proteins with supervised topology. These results compare favorably with existing methods. Source Code: Matlab...3946 days ago
Discussion topics
Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10/abstract http://blogs.nature.com/news/2013/07/genome-assembly-co...3921 days ago
Pages
Bio++ : C Language libraries for your biological need
...files, with support for multiple entries. Phylogenetic reconstuction methods Parsimony (NNI)Distance matrices estimation and I/O to files in Phylip format.Distance methods: (U/W)PGMA, NJ, BioNJ.Maximum...3949 days ago
Introduction to Bioinformatics
...ciples of Computational Biology, Steven Salzberg. Principles of Protein Structure Using the Internet Practical Course "Bioinformatics: Computer Methods in Molecular Biology" Sequen...3922 days ago
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Top-level pages
- ..."The mathematical, statistical and computing methods that aim to solve biological...ich use a multitude of different programs and methods. The protein sequences are f...matics application, and very efficient search methods have been developed [3]. The...
3948 days ago
- ...roximation of the Pi number.Eratosthenes has defined an algorithim for retrieving prime numbers.Averroès (1126-1198) was using algorithmic methods for calculations.Adelard de B...
3947 days ago
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Wire posts
News
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...ificantly lower cost. The availability of hundreds of genomes in a short time is expected to revolutionize area of life sciences. A number of new methods like de-novo sequencing, rese...3846 days ago
- ...; Extended Hückel Theory; Semi-Empirical Methods: e.g. CNDO; AM1; PM3; Paramet...Advantages and Limitations of Semi-Empirical Methods. Applications. &nb...es; Periodic boundary conditions; Monte Carlo Methods; Classical and ab initio mole...
3831 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...species and of the construction of pan- and core-genomes. These challenging tasks will require bioinformatics developments and implementation of methods for accommodating the high le...3950 days ago
- ...es not equal biological knowledge. As biology becomes large-scale, new methods have to be developed to integ...for this position. Experience with high throughput sequencing analysis methods, machine learning, protein in...
3950 days ago
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ResearchLabs posts
- ...and have accelerated the development of understanding in human disease. Research Area: Analysis of Next Generation sequence data in cancer Methods for analysis of structural va...
3949 days ago
- ...h improved quantitative experimental assays (such as microarrays or differential in-gel electrophoresis) and Development of modern computational methods (such as hierarchical probabi...
3949 days ago
- +32 more ResearchLabs posts
Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...decades have seen an exponential increase in genomic and biomedical data, which will soon outstrip advances in computing power to perform current methods of analysis. Extracting new s...3903 days ago
- ...tinguish 'driver' from 'passenger' mutations." David Botstein's fundamental contributions to modern genetics include the development of genetic methods for understanding biological...
3874 days ago
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Bio-Scripts
Biological Sequence handling with Perl !
...'.' => 'concatenate', 'fallback' => 'TRUE'; # These methods should be overriden by child...eadable string sub type { return 'Generic Sequence'; } # These methods probably don't have to be ove...2182 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...this technique I integrated six different protein-protein interaction methods in a way to cover disadvantag...nt of data in databases, there is already a massive need for effective methods to eliminate the manipulated...2363 days ago
Groups
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to...3908 days ago
...ch interest falls in the broad field of bioinformatics and, more specifically into Computational Systems and Biomedicine. We apply computational methods towards understanding and mod...3944 days ago
Tags
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible research 2. Parallel sequencing lives, or what makes large sequencing projects successful https://academic.oup.com/gigascience/article/6/11/gix...Tags: Bioinformatics, Resources, Tools, Methods
542 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis. Here are some general steps to follow for mapping reads to a genome: Choose a read mapper: There are many read mappers availab...Tags: Reads, Mapping, Steps, Methods, NGS
424 days ago
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Comments
Comment on "Tools for Differential expression analysis"
...ribution to model the count data and provides methods for estimating variance and t...ar model to model the count data and provides methods for estimating dispersion and...o model the gene expression data and provides methods for estimating variance and t...422 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf591 days ago
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