Results for "raw"
Users
Skills: ChemDraw2128 days ago
Blogs
String graph based genome assembly software and tools !
...which are often collapsed by other assemblers. Its ultimate goal is to find a minimal set of unitigs to represent all the information in raw reads. If you want to learn...2337 days ago
CANU genome assembly parameters !
...te the error correction process. canu -p test_asmbl \ -d asm_test3 \ genomeSize=2m \ -maxThreads=2 useGrid=false \ -pacbio-raw \ ~/pacbio/dna/sample_reads.f...1953 days ago
- +5 more Blogs
Bookmarks
- ...small RNA This tutorial covers initial steps of the workflow for analysis of short RNA expression such as a quality control of the raw reads, processing of the raw reads for the subsequent anal...
3661 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide sc...1104 days ago
- +61 more Bookmarks
Files
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error:...
2159 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...framework for determining the likelihood of an assembly given the data (raw reads) used to assemble it. I...m is the only platform for standardising transcriptome projects: go from raw trace files to an annotated G...2694 days ago
Awesome perl frameworks, libraries and software - PART 2
...nbsp;- Declarative constraint-based structured drawing system in Perl (as per cha...m - Perl CPAN module Makefile::GraphViz - Draw building flowcharts from Make...erl - Perl library for SHODAN zzengineer/crawlpl - compact crawling to...2502 days ago
- +2 more Pages
Top-level pages
- ...nformatics component. The goal of sequencing projects, for example, is not to corroborate or refute a hypothesis, but to provide raw data for later analysis. Once the raw data are available, hypothese...
3955 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...g SNPs without a reference sequence. Ratan et al, BMC Bioinformatics 11:130, 2010 PubMedCentral Microindel detection in short-read sequence data. Krawitz et al, Bioinformatics 26(6...3788 days ago
- +12 more Top-level pages
Wire posts
News
- ...parsed. There are several BLAST parsers are available, but they are often missing some important features, such as keeping all information from the raw BLAST output, allowing direct...
3898 days ago
Webinar on Fast and Accurate DNA Variant Calling on 26 Apr 2017
Continuing our DNA-Seq webinar series, we'll present Strand NGS v3.0 best-practices: a workflow that identifies highly accurate variants from raw reads. Our best practices work...2579 days ago
Opportunity posts
- ...ents, such as biochemical activities, biophysical properties, subcellular localization and interaction. These technologies produce large amounts of raw data that can be transformed...
3957 days ago
- ...Scope of work : 1. Analysis of different file formats and their conversions. 2. Assessing the quality of data and filtering of raw reads. 3. Assembling the raw reads-de novo as well as refe...
3651 days ago
- +3 more Opportunity posts
Video
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...and converting into actionable information. Currently, the context is drawn from fragmented research lit...rmation into the evidence necessary to support clinical care exceeds the raw human cognitive capacity. I...3879 days ago
Bio-Scripts
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::...2924 days ago
- ...bject, default is "SEQUENCE" PROCESSING Read Splitting Sequence data may be used in raw form or...
2134 days ago
- +8 more Bio-Scripts
Tags
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the frequency of k-mers in sequencing data and predicts t...Tags: FastGT, alignment-free, method, calling, common, SNVs, directly, raw, sequencing, reads, alignment-free
1567 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targeted metagenomics, statistical analysis and results visualization with a large variety of plots (barplot, boxplot, heatmap, &hellip...Tags: SHAMAN, user-friendly, website, metataxonomic, analysis, raw, reads, statistical, analysis
1365 days ago
Comments
Comment on "Short-read assembly using Spades !"
...eral steps for short-read assembly using SPAdes: Quality control of raw reads: Before running the assembly, it is important to ensure that the raw reads are of high quality and...424 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...ur macOS system. Install Homebrew if you haven't already installed it by entering the following command: /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebre...430 days ago
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