Results for "rna-seq"
Users
Brief description: genome annotation, transcriptome, RNA-seq, ChIP-seq, ChRIP, PARCLIP, cancer, noncoding, long-noncoding RNAS, epigenetics1290 days ago
Blogs
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
...ality in Strand NGS was used to find the regulatory role of FoxP3 in T-regulatory and T-helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding...3190 days ago
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of...3190 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...AL, a primary analysis pipeline for NGS data http://bioinformatics.oxfordjournals.org/cgi/content/abstract/28/2/284?etoc RseqFlow: Workflows for RNA-Seq data analysis DOI: 10.1...3481 days ago
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out h...3809 days ago
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Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer a...
3554 days ago
- Explain the DNA and RNA with picture ...
1186 days ago
Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and miniaturised MinION™ device. These are a new gene...3806 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that ca...3941 days ago
Genome Assembly Tools and Software - PART2 !!
...2.6.1 – A LASSO Regression Approach to RNA-Seq Based Transcriptome AssemblyI...pts and estimate their expression levels from RNA-Seq reads. CEM 0.9.1 – Tra...Oases designed to heuristically assemble RNA-seq reads in the absence of a ref...2679 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, statistical and computing methods that aim to solve bi...
3941 days ago
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data s...3940 days ago
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Wire posts
News
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gen...w includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Ana...l analysis using one of the major RNA-Seq analysis tools, DEseq/DEseq2,...torial. Although we focus on RNA-Seq data here, but pathway analys...3826 days ago
Deadly Human Pathogen Cryptococcus Sequenced
"Now, researchers have sequenced the entire genome and all the RNA products of the most important pathogenic lineage of Cryptococcus neoformans, a strain called H99. Th...3656 days ago
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Opportunity posts
Postdoctoral position in bioinformatics @ Sweden
...d on methods development for and analysis of next generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have strong interdiscipl...3941 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...ics & Informatics Europe conference will feature four main tracks on Clinical Exome Sequencing, High Scale Computing, Genome Informatics, and RNA-Seq and Transcriptome Analysis, a...3910 days ago
- +46 more Opportunity posts
ResearchLabs posts
- The research interest of this group include constraint programming, structure prediction in simplified protein models, investigation of protein energy landscapes, detec...
3933 days ago
- Seamless integration of a series of biological processes finally manifests as what we perceive as "Life". In order to gain insights about life and its manifestations in...
3878 days ago
- +16 more ResearchLabs posts
Video
RNA interference (RNAi): by Nature Video
RNA interference (RNAi) is an important process, used by many different organisms to regulate the activity of genes. This animation explains how RNAi works and introduc...3886 days ago
- Transcription is the process by which the information in DNA is copied into messenger RNA (mRNA) for protein production. Originally created for DNA Interactive ( http:/...
3377 days ago
Bio-Scripts
- #!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA; $RNA =~ s/T/U/g; print "RNA sequenc...
2910 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2910 days ago
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Groups
Python is a programming language that lets you work more quickly and integrate your systems more effectively. Python is an easy to learn, powerful programming language....3939 days ago
Tags
- Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set of expressed genes follow but also to disclose th...
Tags: pathway enrichment, kegg, reactome, go, blast2go, RNA-Seq, RNA, Sequencing
3489 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very intuitive workflow for the analysis and visualization of RNA-Seq data. This webinar will give an overview of the workflow which includes Transcriptome/ Genome alignment, Differential exp...Tags: rna-seq, webinar, strand ngs, ngs data analysis
2257 days ago
Comments
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the an...414 days ago
Comment on "Tools for Differential expression analysis"
...: This R package is widely used for analyzing RNA-Seq data. It uses a negative bino...used for differential expression analysis of RNA-Seq data. It uses a generalized l...used for differential expression analysis of RNA-Seq data. It uses a non-parametri...414 days ago
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