Results for "score"
Blogs
...w non-conflicting adjacencies that induce the less homoplasy phenomenon. The species tree is used, in some additional internal steps, to compute a score for the remaining conflicting...2540 days ago
BBTools for bioinformatician !
...trailing and leading bases with Q-score below 1, which means Q0, whic...ap package automatically changes q-scores of Ns that are above 0 to 0...mes. In any case, if the alignment score is higher to one genome than...hp?p=170904In light of the quality-score issues with the NextSeq platf...2280 days ago
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Bookmarks
REAPR: a universal tool for genome assembly evaluation
...east 1000bp). Additionally, if a short insert Illumina library is also available, REAPR can combine this with the large insert library in order to score each base of the assembly. h...2960 days ago
YASS :: genomic similarity search tool
...vity (transition mutations are purine to purine [A<->G] or pyrimidine to pyrimidine [C<->T]) using different scoring schemes with bit-score and E-value evaluated accordi...2935 days ago
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Files
Biotechnology Eligibility Test (BET) Question Paper !
...ately after the exam so you get the upper hand here to check how well you did in the DBT-BET exam, how much you are going to score and if you can pass the Exam with good score. This helps you in planning y...1855 days ago
Biotechnology Eligibility Test (BET) Answer set !
...ately after the exam so you get the upper hand here to check how well you did in the DBT-BET exam, how much you are going to score and if you can pass the Exam with good score. This helps you in planning y...1855 days ago
Pages
Bio++ : C Language libraries for your biological need
...ity and charge + physico-chemical distance (Miyata and Grantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment.Similarity score computation.Sequence bootstra...3957 days ago
Awesome perl frameworks, libraries and software - PART 4
...my Mac OS X command line utils) nekokak/p5-Kamui - Plack base framework nabokov/mecab-dic-overdrive - create new mecab dic file, with score adjustment in accordance with...2504 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...solvent accessible surface area, energy-based scores, and sequence conservation,...dicted sites, and the similar sites with the Z-score ≥ 2.5 were selected. These...y. Furthermore a nifty druggability prediction score has been added to fpocket rec...3754 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...impact predictions, evolutionary conservation scores and pathogenicity Supports...ry file, Best model file, dot file, individual score file, cross-validation file...ge genes and the disease causing variants; can score both coding and non-coding va...2918 days ago
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Wire posts
News
Conserved Domain Database (CDD) version 3.11 released
...in models. The new version now contains the most recent Pfam release 27. Updates to the Conserved Domain Database include: Position-specific score matrices (PSSMs) have been re...3737 days ago
Opportunity posts
Associate Professor - Centre for Bioinformatics at Maharshi Dayanand University, Rohtak
...rses and technology-mediated teaching learning process with evidence of having guided doctoral candidates and research students. (vi) A minimum score as stipulated in the Academic...3806 days ago
JRF at Gautam Buddha University
...Fellow (JRF) No. of Positions: 01 Educational Qualifications: Master degree in any discipline of Life Science with NET qualified or valid GATE score. Desirable Qualification: Pre...3702 days ago
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Fun
What a bioinformatician always dream for ???
...e of all commercial softwares. Complete, and fully assembled genome of the girl :P A girl/boy with lesser E-values and higher compatibility score. Horoscope Match should be s...3855 days ago
Bio-Scripts
Blast result parser with Perl and Bioperl
...sion number, length, description, E value, bit score, query frame, query start, qu...sion_number\tlength\tdescription\tE value\tbit score\tframe\tquery_start\t"; prin.... "\t"; #get the bit score of the hit print OUT $hit...2924 days ago
Needleman-Wunsch Algorithm in Perl
...matrix and gapcost from command line my ($seq1, $seq2, $smfile, $gapcost) = @ARGV; # scoring scheme (instead of using fixed MATCH and MISMATCH scores we will use values read from...2915 days ago
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Tags
Biologist versus computational biologist !
This is how it work :)Tags: bioinformatics, fun, score, thinking, work, script
2025 days ago
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Comments
Comment on "A quick guide to Phred scaling"
...d scaling: Phred quality scores: Phred quality scores are re...se call. For example, a Phred score of 10 corresponds to a base c...or of 1 in 100, while a Phred score of 30 corresponds to a probab...e in the base call. The Phred scores are calculated based on the...425 days ago
Comment on "Basic command-line to run BLAST"
...atches to those words in the database. It then expands the matches to identify longer regions of similarity, called "alignments," and calculates a score for each alignment that refle...430 days ago
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