Results for "seq"
Users
About me: https://sites.google.com/site/seqomics/home http://about.me/vibes1001360 days ago
- Brief description: Currently, I'm pursuing a PhD at Bioinformatics Centre, University of Pune, Pune, India. I have developed an algorithm for alignment-free sequence analysis with its applications in molecular phylogeny, clustering and sero/genotyping .
2923 days ago
- +16 more Users
Blogs
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS applicatio...helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor infor...3195 days ago
Calling narrow and broad peaks from ChIP-Seq data
...ks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Rohit G...3195 days ago
- +7 more Blogs
Bookmarks
Next Generation Sequencing (NGS) Tutorials
...Understanding the basics of genome sequencing: Tutorial by Luke Jos...inference.co.uk/blog/2009/04/basics-sequencing-dna-part-1/ http://ww...ng genetic variations using the HugeSeq pipeline DOI: 10.1038/n...oughput analysis of next-generation sequencing data. http://www....3485 days ago
Public Databases for Bioinformatics !
...nt want this to count towards your quote you must chown /mnt/lab_data/$LAB/ lab accessible data should store lab project data here e.g. ATAC-seq prediction data, enhancer pre...1137 days ago
- +65 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...to reliably order and orient sequence scaffolds generated by N...SO Regression Approach to RNA-Seq Based Transcriptome AssemblyI...sh; DNA Assembly of the Short Sequences coming from 454 sequenc...rowse interface driven by the Seqfeature database. It accepts b...2684 days ago
Awesome perl frameworks, libraries and software - PART 4
...ar/assemblage - Tools for working with second gen assemblies, fasta sequences, etc obfuscurity/nagio...yogan/cope - A colourful wrapper for terminal programs trinityrnaseq/trinityrnaseq - Trinity...2492 days ago
Top-level pages
Bioinformatics Courses Around the World
...se individual research programs. Consequently, we have not included a...ional analysis of biomacromolecular sequences; 2. computational analy...ge, James Bonfield, three-day courseSequencing Project Management Usi...2677 (bioinformatics: computational sequence analysis of biological m...3941 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...nt storage of high throughput sequencing data using reference-b...PubMedCentral Correction of sequencing errors in a mixed set...Comprehensive analysis of RNA-Seq data reveals extensive RNA ed...ery and genetic mapping using sequenced RAD markers. Baird et a...3777 days ago
- +15 more Top-level pages
Wire posts
News
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...rouwer, 2013) workflows on RNA-Seq data pathway analysis and gen...includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Ana...analysis using one of the major RNA-Seq analysis tools, DEseq/DEseq2,...rial. Although we focus on RNA-Seq data here, but pathway analys...3831 days ago
A powerful, yet simple, gene set analysis tool for interpreting RNA-seq and NGS results.
LifeMap Sciences is introducing GeneAnalytics, our new gene set analysis tool, which is applicable for NGS results and differentially expressed gene lists from v...3473 days ago
- +7 more News
Opportunity posts
Postdoctoral position in bioinformatics @ Sweden
...st-doctoral researcher to work with large-scale sequence data analysis. The posit...lopment for and analysis of next generation DNA sequencing, in particular compara...le data, in particular from next generation DNA sequencing, is highly valued. The...3946 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...onference will feature four main tracks on Clinical Exome Sequencing, High Scale Computing, Genome Informatics, and RNA-Seq and Transcriptome Analysis, a...hnologies. The conference will tackle the huge amounts of sequencing data produced by new t...3915 days ago
- +29 more Opportunity posts
ResearchLabs posts
- ...ent interactions by automated phenotyping, using image analysis, machine learning, sparse model building and causal inference. DNA-, RNA- and ChIP-Seq and their applications to gen...
3888 days ago
- ...the analysis of high dimensional data arising from "Multi-omics" applications. In particular, current activities involve the analysis of ChIP-seq and RNA-seq experiments. More at http...
2961 days ago
- +2 more ResearchLabs posts
Bio-Scripts
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2915 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...ter\n". "Print out the name of sequences with characters other t..."If multiple files are given, sequences in all files are marged..._h)); my $format = "fasta"; my @seqArr = (); @ARGV = ('-') unl...if (defined($opt_m)) { my $seqOut = Bio::SeqIO->new(-fs => \...2912 days ago
- +55 more Bio-Scripts
Groups
...thon group aim to provide a social interactive community for python lovers. Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3944 days ago
Tags
- The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writing these packages was handing the locations of genes in eukaryotic genomes. Handle sequence locations for bioi...
Tags: Bioinformatics, Computational Biology, Education, Sequence, Seq, Genome, View
3414 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achieves performance comparable t...Tags: Seq, high-performance, Pythonic, language, bioinformatics, python
1623 days ago
Comments
Comment on "Tools for Differential expression analysis"
...expression analysis, including: DESeq2: This R package is widely used for analyzing RNA-Seq data. It uses a negative bino...ression analysis of microarray and RNA-Seq data. It uses a linear model...ifferential expression analysis of RNA-Seq data. It uses a method based...419 days ago
Comment on "Sibelia: A comparative genomics tool"
...t occur exactly once in each input sequence, such blocks are used as...able for analysis. Please note that sequences that do not contain an...he table designate following: 1. Seq_id -- ID of the sequence, tha...at occur exactly once in each input sequence. This option assumes th...1283 days ago
- +22 more Comments
