Results for "single-end"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make sense of it, biologically. But, most of the newbie bio...3716 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH)...
3948 days ago
- +38 more Blogs
Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1154 days ago
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or...3918 days ago
- +197 more Bookmarks
Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far the development of reliable knowled...3953 days ago
R Graphical Cookbook by Winston Chang
R Graphical Cookbook by Winston Chang A very nice book by Winston Chang for R ethusiast. The R code presented in these pages is the R code actually used to produce the F...2163 days ago
- +1 more Files
Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and miniaturised MinION™ device. These are a new genera...3821 days ago
- The key to finding a solution is to notice that most genomicsequences differ by very little. It may well be that the number of complete genome sequences being stored...
3928 days ago
Pages
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced functional programming with imperative programming Ruby is a dynamic, reflectiv...
3956 days ago
Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with them with an ease. In our day to day simulation, analysis, c...3712 days ago
- +6 more Pages
Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, statistical and computing methods that aim to solve biol...
3956 days ago
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increasingly important tool to transform this data into info...
3955 days ago
- +43 more Top-level pages
Wire posts
News
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simp...3959 days ago
Webinar: Wednesday 21 August 2013 at Noon EDT
This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowled...3928 days ago
- +25 more News
Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to ana...3957 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference SciGenom Research Foundation (SGRF) and Institute of Genomics and Integrative Biology (IGIB)...3931 days ago
- +35 more Opportunity posts
ResearchLabs posts
The Laboratoire de genomique fonctionelle
One persistent challenge of post genome biology remains the determination of the functions of all potential genes. In mammals this task is formidable given that a single...3956 days ago
- Interested in various topics at the intersection of ecology and evolution. In my research I use rotifers as model organisms for experimental studies at the individual and...
1155 days ago
- +7 more ResearchLabs posts
Video
- View more AMAZING medical animations at http://www.nucleuslibrary.com To download FREE medical animations of pregnancy and birth, visit http://www.prenateperl.com/yt2012...
3825 days ago
Flu Attack! How A Virus Invades Your Body
When you get the flu, viruses turn your cells into tiny factories that help spread the disease. In this animation, NPR's Robert Krulwich and medical animator David Bolins...3917 days ago
- +5 more Video
Bio-Scripts
- # To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/Ubuntu system admins should run: sudo apt-get install...
2152 days ago
Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the leng...2925 days ago
- +60 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research interest...2370 days ago
Groups
Awk is widely used these days for extraction and manipulation of large scale biological data in Unix/Linux.Most of the awk code is single liner. Useful Weblinks: http:/...3928 days ago
Metabolomics is the comprehensive and quantitative analysis of multiple metabolites in biological samples. Metabolome is the complete set of small-molecule metabolites...3714 days ago
- +1 more Groups
Tags
- Breakpointer is a fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in searching for local mapping signatures created by insertion/deletions (indels) or more complex structural variant...
Tags: Breakpointer, local, mapping, artifacts, support, sequence, breakpoint, discovery, single-end, reads
2162 days ago
Comments
Comment on "Far Manager Commands and Links !"
KeyDescription F1 Yes! Read it first. BTW, FarEng.hlf is a simple text file, you can open it in any editor. ShiftF1 Create new archive fro...969 days ago
- Usage Summary Produce help page. Quickly check the software usage and available command line options. $ ./fastANI -h One to One. Compute ANI betwee...
1110 days ago
- +13 more Comments
