Results for "sub-species"
Blogs
In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH)...3967 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous genes located on the same chromosome. These block regions ha...2638 days ago
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Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1174 days ago
- LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is...
2967 days ago
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Files
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes.
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes. No interchromosomal microchromosome fusions from the avian ancestor unless otherwise...2015 days ago
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of pla...1947 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short r...2713 days ago
Bioinformatics in Africa: Part5 - Nigeria
Covenant University (CU)Ota:Covenant University (with her enriching and growing stateoftheart laboratories in the area of science and technology...1211 days ago
Top-level pages
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data sug...3974 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to...3807 days ago
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Wire posts
News
Barber pole worm , sheep pathogen sequenced !!!
Haemonchus contortus is a highly pathogenic parasitic nematode of that can infect a large number of wild and domesticated ruminant species and is the most economically im...3924 days ago
- Scientist have found the biggest viruses known, pandoraviruses which opened up entirely /completely... new questions questions and raise objections to in science. It even...
3918 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to ana...3976 days ago
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
BIOINFORMATICS POSTDOC IN FUNCTIONAL EVOLUTIONARY GENOMICS Center for Integrative Genomics, University of Lausanne, Switzerland Two postdoctoral positions (2 years...3946 days ago
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ResearchLabs posts
- We study the evolutionary biology of birds and relatives, combining field, museum and genomics approaches to understand the basis of avian diversity, evolution and behavi...
3856 days ago
- Evolutionary genomics of social insects. Extensive theoretical work has explained how and why complex societies evolve. However, only little is known about the genes and...
3586 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a research field called bioinformatics. In this new field, c...3944 days ago
- Air date: Wednesday, January 04, 2012, 3:00:00 PM Time displayed is Eastern Time, Washington DC Local Category: Wednesday Afternoon Lectures Description: There i...
3900 days ago
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Bio-Scripts
Perl script to run in parellel !
#!/usr/bin/perl use strict; use warnings; use Parallel::ForkManager; use Bio::SeqIO; my ($sequence_data_ref) = parse_genome_files($ARGV[0]); my %genome=%{$seque...1714 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists... Do...1539 days ago
Groups
Comparative genomics is a field of biological research in which the genome sequences of different species — human, mouse, and a wide variety of other organisms from bacteria to chimpanzees — are compared. This group is dedicated to Comparative genomics ...2558 days ago
Tags
Genome sequence-based (sub-)species delineation.
The GGDC web service reports digital DDH for a universal and accurate delineation of prokaryotic (sub-)species without inheriting the pitfalls of classic DDH, and also calculates differences in genomic G+C content. http://ggdc.dsmz.de/ggdc_background.php# Genome-to-Genome Distance Calculator 2....Tags: Genome, sequence, sub-species, delineation
1998 days ago
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a...451 days ago
- First of all thanks for using GeneSCF. I am really sorry to say that current GeneSCF does not support new genome annotation. Since many users are requesting, it is possi...
2662 days ago
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