Results for "transcript"
Users
About me: ...tes evolution. I (We) develop certain computational pipeline, and algorithms to harness the huge amount of biological data (genomes, epigenomes, transcriptomes, proteomes, etc.) to answ...46 days ago
- Skills: Transcriptomics
2247 days ago
- +3 more Users
Blogs
BBTools for bioinformatician !
...mic-like distribution. It could also be used for RNA-seq when using a transcriptome reference.The coverage is...---------------------------------------------Pileup.sh To generate transcript coverage stats C...2306 days ago
Bookmarks
HOMER: Software for motif discovery and next-gen sequencing analysis
...ipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo transcript discovery and differential an...2967 days ago
- ...& Wurm (2011) Visualization and quality assessment of de novo genome assemblies. In brief, our scripts create Cytoscape files to visualize transcript evidence that suggests adjace...
2847 days ago
- +15 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...ssemblyStage1: Perfectly aligns TranscriptSimulator reads to their nucle...ssion Approach to RNA-Seq Based Transcriptome AssemblyIsoLasso is a.... Oases 0.2.08 – De novo Transcriptome Assembler for very short r...vo Assembly of Roche-454/Sanger Transcriptome SequencesiAssembler i...2721 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...bMedCentral Biases in Illumina transcriptome sequencing caused by rando...es 41:21–32, 2013 PubMed Transcriptome analysis Assembly and com...ods.] Optimization of de novo transcriptome assembly from next-generat...HTS and R-Cloud for analysis of transcriptome data3815 days ago
Apps for Busy Bioinformatics Researchers !!!
...ecies, based on gene symbol search. The application provides gene and transcript cross reference information f...also contains an integrated genome browser with information on genes, transcripts, exons and SNPs. More @&nbs...3577 days ago
- +5 more Top-level pages
Wire posts
News
- ...ene set (GENCODE 21) Updated rat gene set including manual annotation from HAVANA New species: Vervet-African green monkey Imported Transcript Support Levels (TSLs) from UC...
3535 days ago
- ...om liquid biopsy samples using DNA-Seq and accurate quantification of transcript-level expression using RNA-Se...variant calling like in cfDNA based cancer diagnostics, and accurate transcript quantification with RNA-Seq....
2407 days ago
Opportunity posts
Bioinformatics PhD studentship available in New Zealand
...vailable in New Zealand The importance of transcriptional control has been explore...ecent shifts towards large-scale analyses of transcriptional regulation on a sequence...a Curriculum Vitae, a copy of your academic transcript, a sample of your written sci...3983 days ago
- ...wetz@ucalgary.ca and provide the following information: - Short cover letter explaining your interest in the lab - Resume - Scanned copy of transcript or listing of course grades...
3817 days ago
- +2 more Opportunity posts
ResearchLabs posts
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...links, such as specific molecular interactions, in eukaryotic cell signaling systems using comprehensive genomics data like genome sequence and transcript profiles. We are interested t...3983 days ago
Video
How DNA is Packaged (Advanced)
...ion of the 6,400,000,000 basepairs (DNA building blocks) that make up your DNA. Originally created for DNA Interactive ( http://www.dnai.org ). TRANSCRIPT: In this animation we'll see...3912 days ago
- Transcription is the process by which the info...nteractive ( http://www.dnai.org ). TRANSCRIPT: The Central Dogma of Molecul...s protein" Here the process begins. Transcription factors assemble at a spec...these factors is referred to as the transcription initiation complex... and...
3420 days ago
Bio-Scripts
- #!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA; $RNA =~ s/T/U/g; print "RNA sequence...
2952 days ago
Install StringTie on ubuntu / Linux !
#StringTie is a software program to perform transcript assembly and quantification of RNAseq data. The binary distributions are available so to install we can just download this distrib...859 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...roject CODE:5153403)) is, applying a bioinformatics-supported genome, transcriptome, proteome, and metabolome...osis and scanning kit based on this profile. Alterations in the gene, transcript, protein, and metabolite prof...2397 days ago
Tags
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, seehttp://arthropods.eugenes.org/EvidentialGene/Construction refers to the co...Tags: EvidentialGene, tr2aacds, mRNA, Transcript, Assembly, Software, Tools
2225 days ago
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Comments
- ...nbsp;output files by default: abundances.h5 is a HDF5 binary file containing run info, abundance esimates, bootstrap estimates, and transcript length information length. Th...
1396 days ago
Comment on "Running Trinity on RNA-seq !"
...ogy of your organism based on your assembled transcripts and the input RNA-Seq data....Such studies might include: Quantifying transcript and gene abundance. This is a...nsDecoder and functionally annotate the transcripts using Trinotate. I...2158 days ago
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