20 days ago
1306 days ago
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
...aryngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Stra...orks.Read the application note on Integrated mRNA and microRNA transcriptome analysis in Strand NGS by Vee...3207 days ago
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
...q Data Analysis Abstract: Strand NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Different...2765 days ago
3244 days ago
2927 days ago
3954 days ago
Genome Assembly Tools and Software - PART2 !!
...LASSO Regression Approach to RNA-Seq Based Transcriptome AssemblyIsoLasso is an a...els from RNA-Seq reads. CEM 0.9.1 – Transcriptome Assembly and Isoform Expressi...ly programs. Oases 0.2.08 – De novo Transcriptome Assembler for very short read...2695 days ago
Awesome perl frameworks, libraries and software - PART 4
...res, no source filter yogan/cope - A colourful wrapper for terminal programs trinityrnaseq/trinityrnaseq - Trinity RNA-Seq de novo transcriptome assembly tokuhirom/p5-router...2504 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...MedCentral Biases in Illumina transcriptome sequencing caused by random h...s 41:21–32, 2013 PubMed Transcriptome analysis Assembly and compar...ds.] Optimization of de novo transcriptome assembly from next-generation...TS and R-Cloud for analysis of transcriptome data3789 days ago
Commercial and public next-gen-seq (NGS) software
...caller" Transcriptomics ERANGE - Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie,...versity of California, BerkeleyNGS-Trex: Next Generation Sequencing Transcriptome profile explorer http://www.b...3528 days ago
2493 days ago
Livestock Functional Genomics Summer School (LFG 2013)
...rstand the basis and the context of livestock big molecular data, and be able to manipulate high density genotypes, whole genome sequences and transcriptome data. The Summer School wi...3938 days ago
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
...s (e.g., the origin and evolution of mammalian sex chromosomes). In the framework of a recently launched series of projects, a large amount of transcriptome and genome (e.g., epigenome)...3928 days ago
3831 days ago
PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN
...nomic and transcriptomic sequences from non-model plant species. We do this by developing approaches to examine gene finding, gene expression, transcriptome assembly, and conserved eleme...1363 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...approaches have been extended to systematically identify insertion/deletion variation, translocations, and rearrangements. In application to transcriptome data, these methods facilita...3880 days ago
2133 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...Briefly, the overall aim of the project which I am working for (AKMARK (Project CODE:5153403)) is, applying a bioinformatics-supported genome, transcriptome, proteome, and metabolome ana...2371 days ago
Comment on "Running Trinity on RNA-seq !"
...nbsp;and functionally annotate the transcripts using Trinotate. If your organism has an assembled genome, consider using the Trinity transcriptome assemblies for gene structure...2133 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
.... --gtf STR Path to a General Transfer Format file. If specified, a transcriptome will be built from the refere...sed for mapping. Output SAM alignments will be in genome space (not transcriptome). -K, --in-fmt STR Format in...2302 days ago