Results for "transcriptome."
Blogs
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of miRN...3191 days ago
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
Live Webinar on RNA-Seq Data Analysis Abstract: Strand NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcr...2749 days ago
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Bookmarks
- You are requested to please bookmark collection of bioinformatics tools, scripts, codes that can be pieced together in a very easy and flexible manner to perform both simpl...
3227 days ago
- High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes grows by the day, quality assessment of the resulting asse...
2910 days ago
- +22 more Bookmarks
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3938 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short rea...2679 days ago
Awesome perl frameworks, libraries and software - PART 4
tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set of plugins for monitoring nginx with Munin openresty/lua-rest...2488 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...e analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome. Peng et al, Nature Biotechnol...t Targeted RNA sequencing reveals the deep complexity of the human transcriptome. Mercer et al, Nature Biotechn...3773 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software th...3512 days ago
- +6 more Top-level pages
Wire posts
News
- Free Live Webinar on Leukocyte immunobiology helps us predict post-operative risk using pre-operative markers on 9 Aug, 8 am PST Speaker: Mario Deng MD FACC FESCProf...
2476 days ago
Opportunity posts
Livestock Functional Genomics Summer School (LFG 2013)
*Livestock Functional Genomics Summer School - Call for applications* 1st Livestock Functional Genomics Summer School (LFG 2013). This School was designed for graduat...3922 days ago
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
BIOINFORMATICS POSTDOC IN FUNCTIONAL EVOLUTIONARY GENOMICS Center for Integrative Genomics, University of Lausanne, Switzerland Two postdoctoral positions (2 years wi...3912 days ago
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ResearchLabs posts
- The Laboratoire de Bioinformatique des Génomes et des Réseaux (Genome and Network Bioinformatics) is specialized in the conception, implementation, evaluation and applicati...
3815 days ago
PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN
Our research focuses on the computational analysis of genomic and transcriptomic sequences from non-model plant species. We do this by developing approaches to examine gene...1347 days ago
Video
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
Full Lecture Abstract Creating an Evidence Engine to Support Personalized Medicine Personalized medicine is transforming biomedical research and healthcare service delive...3864 days ago
Bio-Scripts
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate _ _ | |_ _ __ __ _ _ __ _...
2116 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research interest re...2355 days ago
Tags
- Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up ...
Tags: Magic-BLAST, mapping, next-generation, RNA, DNA, sequencing, whole, genome, transcriptome.
2315 days ago
Comments
Comment on "Running Trinity on RNA-seq !"
Once your assembly is complete, there are several analyses you will likely want to pursue to explore aspects of the biology of your organism based on your assembled transcr...2116 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap Version: v0.5.2Build date: Jun 6 2017...2285 days ago
- +1 more Comments
