BOL

http://impala.molgen.mpg.de/ #metabolomics #proteomics #pathway #analysis

https://lipea.biotec.tu-dresden.de/home #Lipid #pathway #Analysis

https://irkernel.github.io/ #R #kernelfor #Jupyter #Notebook

https://github.com/jbytecode/rcaller #R #JAVA

https://archive.codeplex.com/?p=rclr #R #dotNET

https://www.rplumber.io/ #R #Rcode2webAPI

https://cran.r-project.org/web/packages/RGtk2/index.html #R #GUI

https://rstudio.github.io/packrat/ #R #production

Diagram https://github.com/d3/d3/wiki/Gallery #Plot #Visualisation

Machine learning meets genome assembly https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bby072/5074612 #genome #assembly #machine #learning

samtools view -Sb pilonCor_round1.fasta.out.sam | samtools sort -m 4G -@ 40 -o pilonCor_round1.fasta.out.sorted.bam - && samtools index -@ 40 pilonCor_round1.fasta.out.sorted.bam #SAM2BAM

set the path for python alias python="/usr/bin/python3.3" #python #path #set

samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference

The aim of this program suite is to support checks of #Sequence #Variant #Nomenclature according to the guidelines of the #Human #Genome #Variation Society. https://www.mutalyzer.nl/

Where is genomics going next? https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1626-2 #Next #Genomics #Future